BAC Information

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BAC

Clone NameMSMg01-053G13
Chromosome1 (Build37)3 (Build37)
Map Location 131,177,755 - 131,178,028158,689,230 - 158,689,660
singlet/doubletsingletsinglet
Overlap geneThsd7b
Upstream geneLct, Mcm6, Dars, LOC620659, Cxcr4, LOC100042732
Downstream geneLOC100042745, LOC100042740
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053G13.T7 (MSMg01no053_g13.b1)MSMg01-053G13.TJ (MSMg01no053_g13.g1)
ACCAG281633AG281634
length709693
length of high quality
(start - end)
281 (84 - 364)432 (79 - 510)
definitionCHROMAT_FILE: MSMg01no053_g13.b1 PHD_FILE: MSMg01no053_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:18 2005CHROMAT_FILE: MSMg01no053_g13.g1 PHD_FILE: MSMg01no053_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:18 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(131,177,755 - 131,178,028)(158,689,230 - 158,689,660)
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGATGCG
CGGAATTCACAAGATATAGCAAAGAAGTGGTAAGAGTTCAGATGTGAATA
GGAGTGGATGTCAGTGACCTTGGCCATCCCTGTGACTGGAGTGAGAGAGG
TAGGCAGATGATGTTTGTATTCATCGTTTCTGTGTCACTTTGTACCCACT
GAAGGTATCCTTAGTCCTAGGAAATAATGTCAGTGAGAGGATAGGAGCTG
CTCTTGAGTGAAGCATTTGTGAGAAATCATCGTGTGCTTTTCATTTTACA
AAATACTTTGTTATTATTTACTTGTTTTTTTGCATGTATGTGTGGATGTG
TACCTACTTATGAATGCTTGTCTCTGTATAGGCCTGAATGTGGCATCATA
TGCACTGGAGCTTATTTTTTACTCTATGGTGATTCTCTCATACTGAGGGA
TACTAACTGATTCTTGTATTTCGGCAAGATGTATCAGTTTACTTCATTAA
CTGCTTACTTTTCTCTACTGTTCCTCTTTTTATGTTTTACAGTTTTATCT
TTTGGTAGTTGCCAGCCGCATTTTATTGCTACTTCTACTTGCTGCACAAT
TCTTGGCTTTCCTGTCCTTTTCTTTCTCCCCCTTTGTATAAATCATTCTC
AATTTGTTTTCGTATATACGTCTCTCCTTTTCTCTCTTTGCTCCTCTCTT
TTTTCATAT
NCCCGATGCAGTGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGGATATACAATTTGATA
TGACTTTCTGAGATTACTGATATTAAGATTTGATATAATACTAGGCTTCA
AATGCTAAGCCTATAATAAGACTTCCAGCTATTATTGATGTAGGTAGTTT
AGAGACAACACTGAAAAAATTCTTATGAAATTTTAAGAAATGTCTCAGCA
CTGTTGACCTGGTAACTGTGTAGCCTTCTTCTCCCTCTCACAATAGCCTA
TGATCTCCATTCCAGAGTACATGGTCCAAGCTCTGGTCAATCTCATTACA
TAAAGTGAAACAGGATTCCCTAAAGATATTTCAGAGTCTGAGTGATGGGA
TGACTCCCCCACCCCAGGTTCAACCATCTAATCAGGACAAACCTAAGTCA
GGATCAGAACTCAAGTTTAGACATAAGGATTAAAGCGTCTGAATTGATTG
CTTTGCTGCCCAATCAAGATGAATAATTATAGAAGGAAAAAAAGATATCC
AGCTTTTGAAAGTATTATAGAGAAAGAAAATGTCTTTTCTTTAAGATGAT
GATAATGCGTTAAACCTGAATATGGCCAAAGATTTTTGGCTGAATCACTT
CAGACGATTAAAATGTTTGCTCAATGAGTACCTGTTGTCTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_g13.b1 MSMg01no053_g13.b1 CHROMAT_FILE:
MSMg01no053_g13.b1 PHD_FILE: MSMg01no053_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:18 2005
         (281 letters)



>mm_chr1_131177555_131178235
          Length = 681

 Score =  437 bits (226), Expect = e-127
 Identities = 262/274 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagttcagatgtgaataggagtggatgtcagtgaccttggccatccctgtgactggagtg 60
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 gagttcagatgcgaataggagtggatgtcagtgaccttggccattcctgtgactggagtg 260

                                                                       
Query: 61  agagaggtaggcagatgatgtttgtattcatcgtttctgtgtcactttgtacccactgaa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 agagaggtaggcagatgatgtttgtattcatcgtttctgtgtcactatgtacccactgaa 320

                                                                       
Query: 121 ggtatccttagtcctaggaaataatgtcagtgagaggataggagctgctcttgagtgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 321 ggtatccttagtcctaggaaataatgtcagtgagaggataggagccgttcttgagtgaag 380

                                                                       
Query: 181 catttgtgagaaatcatcgtgtgcttttcattttacaaaatactttgttattatttactt 240
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 381 catttgtgagaaatcatcgtgtgcttttcattttaaaaaatactttgttattttttactt 440

                                             
Query: 241 gtttttttgcatgtatgtgtggatgtgtacctac 274
           |  | | |||||||||||||| ||||||||||||
Sbjct: 441 gcatgtatgcatgtatgtgtgaatgtgtacctac 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no053_g13.g1 MSMg01no053_g13.g1 CHROMAT_FILE:
MSMg01no053_g13.g1 PHD_FILE: MSMg01no053_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:18 2005
         (432 letters)



>mm_chr3_158689030_158689861
          Length = 832

 Score =  810 bits (419), Expect = 0.0
 Identities = 428/431 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgtggatatacaatttgatatgactttctgagattactgatattaagatttgatataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgtggatatacaatttgatatgactttctgagattactgatattaagatttgatataa 260

                                                                       
Query: 61  tactaggcttcaaatgctaagcctataataagacttccagctattattgatgtaggtagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactaggcttcaaatgctaagcctataataagacttccagctattattgatgtaggtagt 320

                                                                       
Query: 121 ttagagacaacactgaaaaaattcttatgaaattttaagaaatgtctcagcactgttgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagagacaacactgaaaaaattcttatgaaattttaagaaatgtctcagcactgttgac 380

                                                                       
Query: 181 ctggtaactgtgtagccttcttctccctctcacaatagcctatgatctccattccagagt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 ctggtaactgtgtagccttcttctccctctcacaatagtctatgatctccattccagagt 440

                                                                       
Query: 241 acatggtccaagctctggtcaatctcattacataaagtgaaacaggattccctaaagata 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatggtccaagctctggtcattctcattacataaagtgaaacaggattccctaaagata 500

                                                                       
Query: 301 tttcagagtctgagtgatgggatgactcccccaccccaggttcaaccatctaatcaggac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcagagtctgagtgatgggatgactcccccaccccaggttcaaccatctaatcaggac 560

                                                                       
Query: 361 aaacctaagtcaggatcagaactcaagtttagacataaggattaaagcgtctgaattgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 aaacctaagtcaggatcagaactcaagtttagacataaggattaaagtgtctgaattgat 620

                      
Query: 421 tgctttgctgc 431
           |||||||||||
Sbjct: 621 tgctttgctgc 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)