BAC Information

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BAC

Clone NameMSMg01-053J24
Chromosome3 (Build37)
Map Location 111,147,010 - 111,147,305
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043190, LOC668712
Downstream geneLOC625585, EG229746, LOC668717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053J24.T7 (MSMg01no053_j24.b1)MSMg01-053J24.TJ (MSMg01no053_j24.g1)
ACCAG281790AG281791
length713704
length of high quality
(start - end)
32 (72 - 103)296 (73 - 368)
definitionCHROMAT_FILE: MSMg01no053_j24.b1 PHD_FILE: MSMg01no053_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:35 2005CHROMAT_FILE: MSMg01no053_j24.g1 PHD_FILE: MSMg01no053_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTGCGGCGCTAACGACTCACTATTCCAGAGGACCGCGGAATTCC
TTGGTGCTCCCTTTCTCCTGCATTTATATATCTTTTTGGGTGAGCACATG
TCTCATACGATGGAAACGTCTATTAGCTTTGCATATCTATGTATACCTGA
ACTATATAAAATTGGAGCGTACTAGAATAAACGTATTTTTCAACTTCCCA
CTCTACACGAGACTGCGCCCTTGGCTTTGCAGCTTTTGCATCCCTTTGAG
AGTTCTGAAACATTGATTATTTTCAGTTCCAGCCAAATTGAGATAAATCC
ATGTATCTGTGCCTTATATTACTCTATCAGGCCCACCTCTCCCTTGGCAA
CTCTTAGGTTACACCCCTATTTGAGAAACATGTATATAACAGGCCCCGCC
TGTGTTATATCCCTAGTTTACTATTCAATAGCTTCATGGTTGCTACCTGC
TTTTTACCGTCCTACATCATCCATCACACCTCTTTCACATACACCGCCGC
ATTCCTTGCTACCATTGATGTATTTACTTACCTTTACCTCCCTTATGCGC
TGACCCCCATCCTCTCGTTACCCTTGCCCCAATATCTTCCCATCCCTGCC
TTTCTCTCATATCGCTTCCCCATATCACCCCCGTCCTTATTTTCCCCATC
CCCGTTCCTTATTCCTTTTCTCCCTTCCCCCATACTATACACTTCGTCTC
CTCCCATTACCAA
CCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCATTGTCTTAGTCACTCCTTTAAAATT
TTGGTGGGAGAATTTGTGAATTCTACGAATTCCTGTTTTGCTTCTAAAGA
AGAATAAGATTGGATAGATAGATTATCTGAAGTGAAAATTGCAGGGCAGT
ATCCACAAGACTTAATTTGTCACTCTTTTCACTATGTCATCATTGAATGC
TTCAGGTCTAGCCTGGTACATTCTGTGTTTAAGAAATTAAAAATTCTATT
AGAAGAGAAGTTAGATATGTGTTATCAAGAGAAACGCGGTGAAAAGGATA
TGAAATTTAATGAATAGAGATAACACTAATAATAATAATAATAATAATAC
TAATAATAACTCAATCCTAGTGTGAAGCACAGTGGTCTGGCCTACTTTCT
TCCTATTCACACCCTGTCCCCTGTGGAAGCTCTATTTCTGTTGATCCATT
GCATAACCTATGCCAGTCTTTTTCAGTGTTCTGTGAATTTAGCTAATAAT
TGATGTCACTATAGCCATCAGTGATAGAGCTTGATTGCCTCCAACGCTAT
AGAAAGCGATAATTATATACACATTTATATTCAGTTACTCAATCTGATTG
GCAGCTTGCCATTTACCTCATCATCTCCTACTTATGAATGATATGACGAA
TTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_j24.g1 MSMg01no053_j24.g1 CHROMAT_FILE:
MSMg01no053_j24.g1 PHD_FILE: MSMg01no053_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:35 2005
         (296 letters)



>mm_chr3_111146810_111147505
          Length = 696

 Score =  572 bits (296), Expect = e-168
 Identities = 296/296 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattgtcttagtcactcctttaaaattttggtgggagaatttgtgaattctacgaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattgtcttagtcactcctttaaaattttggtgggagaatttgtgaattctacgaattc 260

                                                                       
Query: 61  ctgttttgcttctaaagaagaataagattggatagatagattatctgaagtgaaaattgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgttttgcttctaaagaagaataagattggatagatagattatctgaagtgaaaattgc 320

                                                                       
Query: 121 agggcagtatccacaagacttaatttgtcactcttttcactatgtcatcattgaatgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agggcagtatccacaagacttaatttgtcactcttttcactatgtcatcattgaatgctt 380

                                                                       
Query: 181 caggtctagcctggtacattctgtgtttaagaaattaaaaattctattagaagagaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggtctagcctggtacattctgtgtttaagaaattaaaaattctattagaagagaagtt 440

                                                                   
Query: 241 agatatgtgttatcaagagaaacgcggtgaaaaggatatgaaatttaatgaataga 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatatgtgttatcaagagaaacgcggtgaaaaggatatgaaatttaatgaataga 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)