BAC Information

Click to search

BAC

Clone NameMSMg01-053K04
Chromosome3 (Build37)
Map Location 41,052,454 - 41,052,747
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053K04.T7 (MSMg01no053_k04.b1)MSMg01-053K04.TJ (MSMg01no053_k04.g1)
ACCAG281797AG281798
length751711
length of high quality
(start - end)
202 (72 - 273)294 (75 - 368)
definitionCHROMAT_FILE: MSMg01no053_k04.b1 PHD_FILE: MSMg01no053_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:36 2005CHROMAT_FILE: MSMg01no053_k04.g1 PHD_FILE: MSMg01no053_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAGATCCGCGGA
ATTCTATTTAATGTCTGTCTGTGTCAGGCAGGATATGTCCCTGTGAGTGA
AGATGCCTGAAGAATCTAGAAATTCTTAGATCCCCTGGATCTGGAAATAG
AGGCAGCTGTGAGCCACCCAACCTTGGTCCTAGAAAGAAAACTCTTATTT
TGTCTCATGTGTGGGGGTTAACTTTGAATCTGCAGATATGTATCAGGTTT
TTGTTTAGTTGGTTGGTTTTTGTTTCTTTGCTTGTTTCCCCTTCTTTTTT
CCTTCTTCTCTTCTCTTTTCTTTTTTCCTCTCCGCCACCCCTCTTTTTAC
TGGTTTTATTTTCTTTTCTCCCTTCTTCCCCTTTTCTTTCTCTTACCTCT
TTCCTTGTATTATTATTTCCTCTATTACCTCTCTCTTTTTTCTTTTTTCT
CCCTTTTTCCCTTTTTCCTTTCTCCTATTTCCTCTTTCTTCTTTCCACTT
TACTTCTTGACGCTTTTCTTGCTTTCTCCTTTTTCCTTCCCTTCTTTTCC
CTTATCCCCCATACTCCCTTTTTTTCCCCCCTTTTTTTCCTCTTTTTATC
CTCTTTTTTCCCTCTTTTTCCCTTTTTATTGCCTTTTTGCTCCCCTCTCC
TTTTTTTTCTTTCTCTTTTTTACCCCCTCTTCTCTTCTCATTCTTCCACT
ATTTGCTTCCTGTTTTCCCCCCGTTTTCTTCTCTTTTCTTTTCTCTCTTT
T
CATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATCAGTAAGCAAATCAGGCAGAGGTG
TCCTGATGACATTTGTGTTTTAGTTAAGAAAGGCAAAAAAAAAATGCTAT
CCAAAATTGGAGGTTGTTGTAGGGTATGTTAGAAGGTGATATGCCAAGGA
AACAATAACAAACAGCAAAGAGGAAGGGGAACTAAGACCATAGGAGGTGA
GATGGGATAAGGATCCAGGACTTAAATTTACTGGTTGAACAGGACACTCA
TTAAATAAGATGTTCACATTAAAACCCAAACATGGAAATGGCCATGGAGA
TCTGGGCACTGAATTCTTAGATGGCCACATACATTGCTAACATATAAAGA
CGCATGTAGGAACCTCATCATATGTCCCAGTAACTGCTAGGTCATCAGGA
TGCCTGAACAAATCGAGCTTGACACAGCAGGATAGGAAGGTCAAAACGTA
CGGTATCGACTTGGCTGCCTTACCCTGATCATCCCTTTTAGCCTCTGCCC
CTTTTTCGACCTTACCCTTGATGTAACCTGACTTATGGTACCCTCCAATC
CTACTGCACCTTGCTTGCTGTCATGCTACTCTAGTCTGGTGTGCAACCTC
CCTTACCATTCAATATGCTTGTATTTCCTACGCCACCTTATCTTGCGGAT
ACTCCCTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_k04.g1 MSMg01no053_k04.g1 CHROMAT_FILE:
MSMg01no053_k04.g1 PHD_FILE: MSMg01no053_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:36 2005
         (294 letters)



>mm_chr3_41052254_41052947
          Length = 694

 Score =  553 bits (286), Expect = e-162
 Identities = 292/294 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagtaagcaaatcaggcagaggtgtcctgatgacatttgtgttttagttaagaaaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atcagtaagcaaatcaggcagaggtgtcctgatgacatttgtgttttagttaagaaaggc 435

                                                                       
Query: 61  aaaaaaaaaatgctatccaaaattggaggttgttgtagggtatgttagaaggtgatatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaaaaaaaaatgctatccaaaattggaggttgttgtagggtatgttagaaggtgatatgc 375

                                                                       
Query: 121 caaggaaacaataacaaacagcaaagaggaaggggaactaagaccataggaggtgagatg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 caagggaacaataacaaacagcaaagaggaaggggaactaagaccataggaggtgagatg 315

                                                                       
Query: 181 ggataaggatccaggacttaaatttactggttgaacaggacactcattaaataagatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggataaggatccaggacttaaatttactggttgaacaggacactcattaaataagatgtt 255

                                                                 
Query: 241 cacattaaaacccaaacatggaaatggccatggagatctgggcactgaattctt 294
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 254 cacattaaaacccaaacatggaaatgaccatggagatctgggcactgaattctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)