BAC Information

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BAC

Clone NameMSMg01-054A06
Chromosome3 (Build37)
Map Location 32,799,918 - 32,800,252
singlet/doubletsinglet
Overlap geneUsp13
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5
Downstream genePex2, EG545512, LOC100041058, Ttc14, Ccdc39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054A06.T7 (MSMg01no054_a06.b1)MSMg01-054A06.TJ (MSMg01no054_a06.g1)
ACCAG282067AG282068
length765699
length of high quality
(start - end)
591 (121 - 711)501 (79 - 579)
definitionCHROMAT_FILE: MSMg01no054_a06.b1 PHD_FILE: MSMg01no054_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:06 2005CHROMAT_FILE: MSMg01no054_a06.g1 PHD_FILE: MSMg01no054_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCTATCTT
ATCCCCTCCCCACCCCCNNTNTTTCTCTATXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCATGACCCCCATGTGATT
CAGCTCAGTTGCATTGGAAGTGGGATTGCTTGAGTGGTACCTGGGTATCA
AGTACCTGGAGGGGCTCTCAATGGGCTCTGTCCAGAGACCAAACACTGCT
GGAAGTTAGTCTGGTGTGGTGTATAACGAATGCTAAATTTTGAACCCCAA
GATCTGGTTGCCCCCAGACAAGTGAATTCTCGGGTACACCAGCTCCCCAA
TTTGCTGTGTAAACATTGCTCCCCAATTTTAGACAAAAGGGAGAGAAGAA
GAAGAAAGAGGAGAAAGAGGAGGGAGAGAGCAGGTCTCCATTAGATATGA
TGGGCCAGGAGCACATGCCTGAGTGACATGGACCCTGAGGACACACTGAT
GGAGCAGAAATAACCTTGGTGAGACAGCAAGTACTGGGGAGTGCAGCTGG
AGAAGTAGCCAGACTGGCACTAGAAACATAGATTGGGGTAATTCCCTCAG
TAATTGTGTTACTGCTGAATAACTAAATCGTAGCGTCAGTCTCTTTTATT
TAGAAGTTAGCCAGGGATAGAAATAAATGTATTAATTTAGATTTGATATC
CAACATAACAGCATAAATCTAAACTTAAAAAGTTCCATGTGAAGACAATA
CAAGCACTCCCCAGT
NTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCATTTTTCTAAAAGTTGCTT
TGTATTTCCATGGCTCAGGTAAGCTGTCTGCTTTGGTTTTGCTATGAAGA
GACACCATGACCATGGCAAGTCTTATAAAGAAAAATATTTAATTGGGACT
GGCTTACAGGTTCAGAGGTTTAGTCCATTATTGTCATGGTGGGTAGCATG
GCAGCATGCAGGCAGACATGGTGCTGGAGAGGGAGCTGAGAGTTCTACAT
CTAGATTGGCAGGCAGCAGAACAAAGCATTGGGCCTGGCTTGGGCTTCTG
AAATGCCAAGGTCCACACTTAGTGATACATTTCCTTCCCAAGGCCACACC
TCCTAATGTCACTCCCTGAGATGAGTCTCCAGGGGCCATTCTTATTGGCC
CACCCATGTCTCTACCCACTCAGGACATTTACAGGCATCTAGATTCTGGG
GCTCTGTGGTGGACTGCACTGTCTAGGTAATGTCTTACTTAGGATTTCTA
TTGCTGCATTGAAACACCATGACCAAAAGCAAGTGGGTCGGAGGAAAGGG
TTTATTTGGCTTACACTTCCACTTTGTCATTCGTCATTGAAGGAAGTCAG
GACAGAAACTCAGACAAGGGAGGAACCTGGGGGCCAGAACTGATGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_a06.b1 MSMg01no054_a06.b1 CHROMAT_FILE:
MSMg01no054_a06.b1 PHD_FILE: MSMg01no054_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:06 2005
         (591 letters)



>mm_chr3_32799918_32800908
          Length = 991

 Score =  603 bits (312), Expect = e-177
 Identities = 330/336 (98%), Gaps = 1/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcatgacccccatgtgattcagctcagttgcattggaagtgggattgcttga 63
           ||||||||||| |||  ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 335 ggaattcttcacgacttccatgtgattcagctcagttgcattagaagtgggattgcttga 276

                                                                       
Query: 64  gtggtacctgggtatcaagtacctggaggggctctcaatgggctctgtccagagaccaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gtggtacctgggtatcaagtacctggaggggctctcaatgggctctgtccagagaccaaa 216

                                                                       
Query: 124 cactgctggaagttagtctggtgtggtgtataacgaatgctaaattttgaaccccaagat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 cactgctggaagttagtctggtgtggtgtataacgaatgctaaattttgaaccccaagat 156

                                                                       
Query: 184 ctggttgcccccagacaagtgaattctcgggtacaccagctccccaatttgctgtgtaaa 243
           ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 155 ctggttg-ccccagacaagtgaattctcaggtacaccagctccccaatttgctgtgtaaa 97

                                                                       
Query: 244 cattgctccccaattttagacaaaagggagagaagaagaagaaagaggagaaagaggagg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  cattgctccccaattttagacaaaagggagagaagaagaagaaagaggagaaagaggagg 37

                                               
Query: 304 gagagagcaggtctccattagatatgatgggccagg 339
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  gagagagcaggtctccattagatatgatgggccagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)