BAC Information

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BAC

Clone NameMSMg01-054C18
Chromosome3 (Build37)
Map Location 45,538,967 - 45,539,289
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580
Downstream geneLOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054C18.T7 (MSMg01no054_c18.b1)MSMg01-054C18.TJ (MSMg01no054_c18.g1)
ACCAG282181AG282182
length682699
length of high quality
(start - end)
333 (13 - 345)516 (77 - 592)
definitionCHROMAT_FILE: MSMg01no054_c18.b1 PHD_FILE: MSMg01no054_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:18 2005CHROMAT_FILE: MSMg01no054_c18.g1 PHD_FILE: MSMg01no054_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTAAACGACTCACTTTCAAAAGAGGATCCGCGGAATTCTTCTT
ACATACTGCTTGGAGAAGCTTTTTGTCTTTGGAGTTGAAAGGGTGCATTT
ATTCTAACATGTCTTAGGGAAGACCTGGTTAAAATTACTATTGTGATCAT
TGAACCATCTTGTCCTTACATATGGCAGGTTTTGCTATGATGATTTTCAA
TAATTTGACCTTCTCATGTCTCCTCTCAATTCAAATATGTCAAGCATTTT
CCTTTAATATTTCTCCAAATTCCTTGTAAGCTTTCTTTTTAAAAATTGAA
TTTTATTGCATGTGTACTAGCCTCTACCTTTCTGAATGTCCTGATATCAA
AGGCAACCTCTCCTGAGTCACTGCTGTCCTAGCAATGCTAGTTTCAGAAA
CTACATAGTATAGTAAGATGACACAAAAATTGGCACATGGAATGGCTGAA
AACAAGAAAAAAGTAAATGAGTTCAGGAGAAGGCAAATGAATCAGAAGCC
TACTCATTAATCTACTCAGGAATGCATAAAACACTGAAAGCCATAGCATA
TATGCAGAGGAACTAAGGTTGTCCTGTGCAGACTCTGTGCACTGTCTCAG
TCTCTATTAGCTCATATGAGCATTGATCATACGTTGACTTACAGAGACTT
GTTTTCTTGATTTACTCCATCCCCTCTGGATC
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTT
TTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTCAGTTCTTTATA
TATATATTAGATATTACATATATATATATATATATATATATATATATATA
TATATATATATAAGATATTAGTCCCCTATCTGATTTAGAATAGGTAAAGA
TTCATCCCCAGGCTATTGGTGTCCTTTTTTTTTTTTTATTGATGGTGTCC
TTTGCCTTACAGAAGCTTTTGCAATTTTATGAGGTCCCATATGTCAATTC
TCAATCTTACAGCACAAGCCATTGCTCATCTATTCAGGAATTTTTCCCCT
GTACCCATATCTTCAACGCGTTTCTCCACTTTCTCCTCTATAAGTTTCAC
TGTCACTGGTTTTATGTGGAATTCCTTGATCCACTTAGATTTGACCCTAA
TACAAGGAGATAGGAATGGATCAATTCCCATTTTTCTACATGTTAACCGC
CAGTTGTGCCACCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGAT
GGTTTTAGTTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGTGTGG
GAAGCCACATGTGCCATTGCAGGGAGGTGCTGGTTGTCACTGGCCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_c18.b1 MSMg01no054_c18.b1 CHROMAT_FILE:
MSMg01no054_c18.b1 PHD_FILE: MSMg01no054_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:18 2005
         (333 letters)



>mm_chr3_45538757_45539490
          Length = 734

 Score =  497 bits (257), Expect = e-145
 Identities = 299/323 (92%), Gaps = 18/323 (5%)
 Strand = Plus / Plus

                                                                       
Query: 28  gaattcttcttac-atactgcttggagaagctttttgtctttggagttgaaagggtgcat 86
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattcttcttattatactgcttggagaagctttttgtctttggagttgaaagggtgcat 270

                                                                       
Query: 87  ttattctaacatgtcttagggaagacctggttaaaattactattgtgatcattgaaccat 146
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttattctaagatgtcttagggaagacctggttaaaattactattgtgatcattgaaccat 330

                                                                       
Query: 147 cttgtccttacatatgg----------------caggttttgctatgatgattttcaata 190
           |||||||||||||||||                |||||||||||||||||||||||||||
Sbjct: 331 cttgtccttacatatggtatcttataagattagcaggttttgctatgatgattttcaata 390

                                                                       
Query: 191 atttgaccttctcatgtctcctctcaattcaaatatgtcaagcattttcctttaatattt 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 atttgaccttctcatgtctcctctcaattcaaatatgtcaagcattttcctttaatattt 450

                                                                       
Query: 251 ctccaaattccttgtaagctttctttttaaa-aattgaattttattgcatgtgtactagc 309
           ||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |||||||
Sbjct: 451 ctccaaattccttgtaagctttcttttaaaataatggaattttattgcatgtatactagc 510

                                  
Query: 310 ctctacctttctgaatgtcctga 332
           ||||||||||| |||||||||||
Sbjct: 511 ctctacctttccgaatgtcctga 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 734
Length adjustment: 9
Effective length of query: 324
Effective length of database: 725
Effective search space:   234900
Effective search space used:   234900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)