BAC Information

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BAC

Clone NameMSMg01-054C21
Chromosome3 (Build37)
Map Location 116,000,538 - 116,001,126
singlet/doubletsinglet
Overlap geneCdc14a
Upstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88
Downstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054C21.T7 (MSMg01no054_c21.b1)MSMg01-054C21.TJ (MSMg01no054_c21.g1)
ACCAG282187AG282188
length787749
length of high quality
(start - end)
---600 (132 - 731)
definitionCHROMAT_FILE: MSMg01no054_c21.b1 PHD_FILE: MSMg01no054_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:18 2005CHROMAT_FILE: MSMg01no054_c21.g1 PHD_FILE: MSMg01no054_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATTATATGGGAAGGGAAAAGNNNNNNAGGGGGNNGGGGGNNGGNNNAAT
TAGTCTAGATTCACNNNNGNNNCCCTTTCGTACTGANNGNGGNNNNNNNN
TTTACAAAAAAAGTNTGGNNNNNNGGNNNNGGCTCTGGGTTNGNTNGTTT
TTTTTTGCCGNTTTTTGTGTTGGGTGTTTTTGTGGGGGNGNNNNNGGGGG
GTTGGGGTGGGGGTGGNNTGTGGNTNNTTTTGGGTGGNGGNNGGTTNTGG
NGGNGTGTGTTGGTGTNNNGGGGTGGGGGNGTGNTGGTTTTTTGTGGGGN
TTGTGGTGGGGTGGGGGGTGGGNGGTGTGTGGGTGGGGGTGGGNGNNNGG
GGTTTTGGGTGGTTTTNGGNGGGGGGGGGGGGGGGGNGGGNGGNGGTTTT
TTTTTGTCCCCCCGGGGGGGGGGGGGGGNGGGTGTGTGTNTGTGCGTGTG
TGGGGCGCGTGAGAGAAAAAAGAGATGAAAGGTGGTTGGAGTGCTGTGAT
TGAGTGTTTGATGGGTTGGGTTGTGGTGTAGGTGGTGTTTGTGGTTAAGT
GAAGTTTGTTGAGTTGGGGGGGTGAGGAGTGGTGAACGTGTGATTGAGGG
TGAGGGATGTAGGGGTGTGGATGGTATGATGGNTGAGAGATAGAAGTATT
GTGGTGTATATGGGTATGTGGGAGGTGTGGGTGTATGTGTGTGGGATGAA
GATAAAAGTTGTGGTAATGATGAATGATGTTTGTTTTTGTGTTTGTTGTG
GTGTGTATTTGATATTGTGTTGTATTGATTGGTTGAT
NNNNNNNNNNCCCCNNNGGGGNCCGGCCCTCCCAATCTCCCNNTTTATTT
NNNNNCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCTCGAGCTGCTGAGCA
GTTCTTTTTGCTTCTCTGTTCTAAACTCTATTTGGAGTTTCACACGAAGG
TTTCTGCTACTCTGTCGGGTTCTCCCTGATGTGCCGGGGTTTTGTATGGA
AGCCAGAGTGTGAAGAAAAGAAAGGCTGGGCCAAGTTTTGGTGTTTTCCA
CTACCTGACTTCACCTTCCGTTTTTGAGGATTGCCTGAGTGATTCCTCCA
TGTGTCTGAGAAATTATAAACCATCTTGCTTTTGGAGTTTAAAGTTACCC
AACCAAATCAGTGCTGGCAGTGGACATCTGACTATATGGCAATCGAAACC
CTGTGATAGTTCACATAGGGTTCAAAAGAAAAGCAATCTTATAAGCACAG
AGAGGGTGTATTGGGACCATGGTTCTCAACCCAACGGTCGCGACCCCTTG
GGTGTCAGATGTCCCTTTCTCAAGGATCCCATATCAGATATCCTGGATAT
GTAAGATATTTACATTGTGATTCACAACAGTAGCCAAATTATGGTAATGG
AGTGGCTATAAAAATAATTTTATGGTTGAGGTGAAGAGTTACCACAACAT
AAAGAAATGTATTACCAGGTCACAGCATTAGGAAGGTTGAGCGTCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_c21.g1 MSMg01no054_c21.g1 CHROMAT_FILE:
MSMg01no054_c21.g1 PHD_FILE: MSMg01no054_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:18 2005
         (600 letters)



>mm_chr3_116000538_116001537
          Length = 1000

 Score = 1077 bits (557), Expect = 0.0
 Identities = 581/589 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctcgagctgctgagcagttctttttgcttctctgttctaaactctatttggagtttc 60
           ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 589 tgcctcgcgctgctgagcagttctttctgcttctctgttctaaattctatttggagtttc 530

                                                                       
Query: 61  acacgaaggtttctgctactctgtcgggttctccctgatgtgccggggttttgtatggaa 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 529 acacgaaggtttctgctactctggcgggttctccctgatgtgccggggttttgtatggaa 470

                                                                       
Query: 121 gccagagtgtgaagaaaagaaaggctgggccaagttttggtgttttccactacctgactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gccagagtgtgaagaaaagaaaggctgggccaagttttggtgttttccactacctgactt 410

                                                                       
Query: 181 caccttccgtttttgaggattgcctgagtgattcctccatgtgtctgagaaattataaac 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 caccttccgtttttgatgattgcctgagtgattcctccatgtgtctgagaaattataaac 350

                                                                       
Query: 241 catcttgcttttggagtttaaagttacccaaccaaatcagtgctggcagtggacatctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 catcttgcttttggagtttaaagttacccaaccaaatcagtgctggcagtggacatctga 290

                                                                       
Query: 301 ctatatggcaatcgaaaccctgtgatagttcacatagggttcaaaagaaaagcaatctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ctatatggcaatcgaaaccctgtgatagttcacatagggttcaaaagaaaagcaatctta 230

                                                                       
Query: 361 taagcacagagagggtgtattgggaccatggttctcaacccaacggtcgcgaccccttgg 420
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 229 taagcacagagagggtgtattgggaccatggttctcaacccgagggtcgcgaccccttgg 170

                                                                       
Query: 421 gtgtcagatgtccctttctcaaggatcccatatcagatatcctggatatgtaagatattt 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 gtgtctgatgtccctttctcaaggatcccatatcagatatcctggatatgtaagatattt 110

                                                                       
Query: 481 acattgtgattcacaacagtagccaaattatggtaatggagtggctataaaaataatttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 acattgtgattcacaacagtagccaaattatggtaatggagtggctataaaaataatttt 50

                                                            
Query: 541 atggttgaggtgaagagttaccacaacataaagaaatgtattaccaggt 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  atggttgaggtgaagagttaccacaacataaagaaatgtattaccaggt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)