BAC Information

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BAC

Clone NameMSMg01-054N03
Chromosome3 (Build37)
Map Location 70,038,145 - 70,038,670
singlet/doubletsinglet
Overlap genenone
Upstream genePpm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
Downstream geneLOC100041384, LOC625868, LOC670542, EG625901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054N03.T7 (MSMg01no054_n03.b1)MSMg01-054N03.TJ (MSMg01no054_n03.g1)
ACCAG282653AG282654
length680782
length of high quality
(start - end)
566 (39 - 604)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no054_n03.b1 PHD_FILE: MSMg01no054_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:05 2005CHROMAT_FILE: MSMg01no054_n03.g1 PHD_FILE: MSMg01no054_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATTCCAAGAGGATCCGCGGAATTCAGATGTTCCCTCTCAGCTCT
ACCTCCACTGTGCCTGCCTGGATGATGCCATGCTCCCATCTTGACGATAA
TGGACTGAACCTCTGAACCTGTAAACCAGCCCTAATTAAATGTTGTCCTT
CATAATACTTGCCTTGGTCATGATGTCTGTTCACAGCAGTAAAACCCTAA
CTAAGACAAGAATGGATGTATCATTACTACTATTTGATTATGTATCTATG
AATGCCAAAGTAGGTAATAAAAGTTTTTGTAAAATTCTCAGGATTGGTGA
AATAGAAAATAGATTTCTCCACTCAAATAGCCTACTTAATGGCAAATATA
TATATACATATACATATACATATACATACACATACACATACACATACACA
TACACATACACATACACATACACATGCACATACACATACACATACATATA
CGTATAGACACATAAATATATATTTGTTTTTTAAGACTTTATTTATTTAT
TTGATATTTTCTTTATTTACATTTCAAATGTAATTCTCTTTCCTGGTTTC
CCCGATCCCCTACCCCCTTCCCCTGCTCACCAATCCACCCCACACCTGCT
TTCTGGTCCTGGCATTTCTCTACACTGGGGCTTATAGCCTTCACAGGACC
AAAGGCCTTTTCTCACATTGATGATCAACC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAGAGGCTAGGAAGAATGTCC
TGGGCATGGATGGGAGGCCCTCTAAGATGGGAGGGCAACTGAAGATAAGG
AGCACCTAAAAGCCTATCGCCAGGCTCTAATGGCAGGTCTCATCTCTGTG
GGGCTGGGAAGTGCTCCACCAATCTGACTAAGGAAAAAGGAAGTTACAGA
AGTTAAAAGGTTTGCAGGACAAGTCAGTAAGAGAGTTATGCAGGTTGATA
AGAAAGTATAGAGGAGGAGAAATGAAGGAAAGATGGAAGGAAGGAAGGAA
GGAAGGAAGGAAGGAACGCGCTGCCACGAAGGAAGCTAAGAAATAGCGAA
AATTCAGCCCTAATAGAACCCCCTCTGTATCATCTTCGTACTTTGGTAGA
TGAGTATCCCCCACACTCAACTGTTCTACCCACACCCCGTGACACGATCC
ACCTTCCCCGCTCCCAAATTCCAGATTCTCCCTTGCTGGCCCCGATCCAC
TAACTCTTATTGTCCCGCTCATGTCCCACTGACCCAGGCCCCTCACCTAC
CCTATAGGCACATTCCATGTAGTTCCTGGACTCCACTTTCGCCGCGATGT
TTTTCTTGTGCTTTCAACACCACGAGGGTTATTATTCATTCTCCTCTATT
TTTCTTATTTACCTAATTTCATCTAACATTTCTCTAGCCGCTACCCTCTC
CTTTCTTTTTTTTATTCTTTGTTTTTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_n03.b1 MSMg01no054_n03.b1 CHROMAT_FILE:
MSMg01no054_n03.b1 PHD_FILE: MSMg01no054_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:05 2005
         (566 letters)



>mm_chr3_70037944_70038908
          Length = 965

 Score =  735 bits (380), Expect = 0.0
 Identities = 505/570 (88%), Gaps = 49/570 (8%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctctcagctctacctccactgtgcctgcctggatgatgccatgctcccatcttgacgata 61
           ||||||||||||||||||||||||||||||||||| |||  |||||||||||||| ||||
Sbjct: 202 ctctcagctctacctccactgtgcctgcctggatgctgctttgctcccatcttgatgata 261

                                                                       
Query: 62  atggactgaacctctgaacctgtaaaccagccctaattaaatgttgtccttcataatact 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atggactgaacctctgaacctgtaaaccagccctaattaaatgttgtccttcataatact 321

                                                                       
Query: 122 tgccttggtcatgatgtctgttcacagcagtaaaaccctaactaagacaagaatggatgt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgccttggtcatgatgtctgttcacagcagtaaaaccctaactaagacaagaatggatgt 381

                                                                       
Query: 182 atcattactactatttgattatgtatctatgaatgccaaagtaggtaataaaagtttttg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 382 atcattactactatttgattatgtatctatgaatgccaaagtaggtaataaat-tttttg 440

                                                                       
Query: 242 taaaattctcaggattggtgaaatagaaaatagatttctccactcaaatagc-ctactta 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct: 441 taaaattctcaggattggtgaaatagaaaatagatttctccactcaaata-ctctattta 499

                                                                       
Query: 301 atggcaaatatatatatacatatacatatacatatacatacacatacacatacacataca 360
           |||||||||||||||||| ||||| ||||| ||||| |||    ||    ||    ||  
Sbjct: 500 atggcaaatatatatatatatatatatatatatatatata----ta----ta----ta-- 545

                                                                       
Query: 361 catacacatacacatacacatacacatgcacatacacatacacatacatatacgtataga 420
             ||    ||||||  ||||  ||||  ||||||          ||||||||      ||
Sbjct: 546 --ta----tacaca--caca--caca--cacata----------tacatata------ga 577

                                                                       
Query: 421 cacataaatatatatttgttttttaagactttatttatttattt----gatattttcttt 476
           |||||| |||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 578 cacatacatatatatttgttttttaagactttatttatttatttatttgatattttcttt 637

                                                                       
Query: 477 atttacatttcaaatgtaattctctttcctggtttccccgatcccctacccccttcccct 536
           |||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||
Sbjct: 638 atttacatttcaaatgtaatcctctttcctggtttcccctatcccctaccccctttccct 697

                                         
Query: 537 gctcaccaatccaccccacacctgctttct 566
           ||||||||| ||||||||||| ||||||||
Sbjct: 698 gctcaccaacccaccccacacttgctttct 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 965
Length adjustment: 10
Effective length of query: 556
Effective length of database: 955
Effective search space:   530980
Effective search space used:   530980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)