BAC Information

Click to search

BAC

Clone NameMSMg01-055D20
Chromosome3 (Build37)
Map Location 51,234,579 - 51,234,895
singlet/doubletsinglet
Overlap geneNarg1
Upstream geneSlc7a11, EG621304, LOC100039667, Ccrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1
Downstream geneRab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055D20.T7 (MSMg01no055_d20.b1)MSMg01-055D20.TJ (MSMg01no055_d20.g1)
ACCAG282962AG282963
length698766
length of high quality
(start - end)
316 (42 - 357)99 (59 - 157)
definitionCHROMAT_FILE: MSMg01no055_d20.b1 PHD_FILE: MSMg01no055_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:36 2005CHROMAT_FILE: MSMg01no055_d20.g1 PHD_FILE: MSMg01no055_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGATCTCCTCGACAGCAATAAGCATTTTTTTTTAATTTTATTATTTTAT
TTTTATTTTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGT
CCGGGCTGTCCTGGAACTCGCTTTGTAGACCAGGCTGGCCTTAAACTCAG
AAATATGCCTGCCTCTGCCTCCACTGCCCGGCAGCAATAAGCATCTTAAT
CACTAAACTATGTCTCTAACCCACACATGCCTTCATTTTTATTAAAGTCT
CATTTTGCTGTTTTGTTGGGGACTTGATTTGGGGGATAGGGTCTTTCTAT
GTATTTTATGCTAGCCCACCACTTGGCTTCCAGAGTGGATTGCTGAGATT
ACACACATGTACCATCTTGCTTGTTATCTTTGTAATGCTGTGCTAGGCCT
AGGCCCATTTGCCCCATATGCTATACATTTAGGTTTTTTTTTTTCCTTAA
AGATTTATTTATTGATTATATGTTAAGTACACTGTAGCTGTCTTCAGACA
CTCCAGAAGAGGGAGTCAGATCTCATTACGGATGGTTGTGAGCCACCATG
TGGTTGCTGGGATTTGAACTCCGGACCTTCGGAAGAGCAGTCGGGTGCTC
TTACCCACTGAGCCATCTCACCAGCCCGGACATTTAGTTTTTATTACG
TCTGGTGGCGCCTGGNCTTCCCATTAGGTGAACTATAGAAGGATTTTCAA
AAAATGATGAGAGACTTGTGAACCTCTCTCTCCCAAATAAGGAATGTCGT
GAGCTCCTTAACACTGACCCAGGCTTCCCTGTCTCCCTTGATGTGCTTAT
TTCTCTGTCAGGATTGCAAGGCGGTTCTTCTACTCCAGGATGACAATGGG
ATGGCCATGTTATGCCTACAGGGAAAATCTGTGCTATTATAATTTCTTGT
ACAGACTTCAGGAATGTGTAAGTCGACAGAGCTCTCCACTCACCGTGGCT
AAAATTTCTTTTTTTACAAAGTTCGTGAAATCACTTGGCACTTGAGTATA
TTGATTTCACGGCCCCACCTCTATTCCATCCCTAAAGCCCTCATTTTGCT
AGGCCCCGAAATTTACCTCTACTGATTTGAGACTCCCCTGCCTTCCACGG
TTTCTCTGGCTTACTCTCCTGTGACGTGCCGTCATATCCCCCCTGACTTT
GTTGATCATGCTGGTTCCCATTCCTCCTCTTTCTGATAATATCTTCTCCC
ACCGTTGTACCATATTGCTCTTGCCCACTGCTGCATTTCCGCCTTGTGTT
TTGTTCCCCCACAGACCTGTTATCGTCTTCTGTTACCCCATCGCTTCACA
GCACAGATCATTGTTTCTTTCTAACCCCTCAATTTCTCCACCCCCCCCCT
GCAATAGTCCTGTCGTCGCCGTAATTCTCTTTCCACAACCGCCTTATCTT
TCTTCCTCCCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_d20.b1 MSMg01no055_d20.b1 CHROMAT_FILE:
MSMg01no055_d20.b1 PHD_FILE: MSMg01no055_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:36 2005
         (316 letters)



>mm_chr3_51234198_51234913
          Length = 716

 Score =  549 bits (284), Expect = e-161
 Identities = 305/318 (95%), Gaps = 11/318 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagatctcctcgacagcaataagcatttttttttaattttattattttattttta 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gaattcagatctcct-gacagcaataagcatttttttttaattttattattttattttta 640

                                                                       
Query: 65  t----------ttttgttttgttttgtttttcgagacagggtttctctgtgtagtccggg 114
           |          |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 639 tttttgctttgttttgttttgttttgtttttcgagacagggtttctctgtgtagtccagg 580

                                                                       
Query: 115 ctgtcctggaactcgctttgtagaccaggctggccttaaactcagaaatatgcctgcctc 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ctgtcctggaactcgctttgtagaccaggctggccttaaactcagaaatatgcctgcctc 520

                                                                       
Query: 175 tgcctccactgcccggcagcaataagcatcttaatcactaaactatgtctctaacccaca 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgcctccactgcccggcagcaataagcatcttaatcactaaactatgtctctaacccaca 460

                                                                       
Query: 235 catgccttcatttttattaaagtctcattttgctgttttgttggggacttgatttggggg 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 catgccttcatttttattaaagtctcattttgctgttttgttggggacttgatttggggg 400

                             
Query: 295 atagggtctttctatgta 312
           ||||| ||||||||||||
Sbjct: 399 ataggatctttctatgta 382


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)