Query= MSMg01no055_i14.b1 MSMg01no055_i14.b1 CHROMAT_FILE:
MSMg01no055_i14.b1 PHD_FILE: MSMg01no055_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:58 2005
(299 letters)
>mm_chr3_140502302_140502999
Length = 698
Score = 484 bits (250), Expect = e-141
Identities = 280/292 (95%), Gaps = 6/292 (2%)
Strand = Plus / Minus
Query: 5 ttggaattaaagatggccattactgcctagctttttgtcatgcttttttgtttctccgct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 661 ttggaattaaagatggccattactgcctagctttttgtcatgcttttttgttt----gtt 606
Query: 65 tgttttgttttgttttgttttgttttgagctaggggcttatgctttcccaggaaggattt 124
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 605 tg-tttgttttgttttgttttgttttgagctaggggcttatgctttcccaggaaggtttt 547
Query: 125 gaacacacagcaatcctcttgcctcagcatccaaaattttgggattaaaggatttttgaa 184
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 546 gaacacacagcaatcctcttgcctcagcctccaaaatcttgggattaaaggatttttgaa 487
Query: 185 tgctacacaattccctggtttgatatcacccttcaaggcctcattcatactgaacacaag 244
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 486 tgctacacaattccctggtttgatatca-ccttcaaggcctcattcatactgaacacaag 428
Query: 245 agtcacattagagaatactaaccagctagtggccaccagtagcctctgctgg 296
||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 427 agtcacattagagaagacaaaccagctagtggccaccagtagcctctgctgg 376
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 698
Length adjustment: 9
Effective length of query: 290
Effective length of database: 689
Effective search space: 199810
Effective search space used: 199810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_i14.g1 MSMg01no055_i14.g1 CHROMAT_FILE:
MSMg01no055_i14.g1 PHD_FILE: MSMg01no055_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:58 2005
(420 letters)
>mm_chr3_140330409_140331228
Length = 820
Score = 795 bits (411), Expect = 0.0
Identities = 417/419 (99%)
Strand = Plus / Plus
Query: 1 actatcctcctgcttcagcctccatggtactgacatagcaggggtaccgttttaatccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatcctcctgcttcagcctccatggtactgacatagcaggggtaccgttttaatccat 260
Query: 61 tcagatccacactggtttttatatcgagcaattacttaaaaattcctggttaataacatc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagatccacactggtttttatatcgagcaattacttaaaaattcctggttaataacatg 320
Query: 121 gcactttgaaaacctgaggtgatattttttctgattaagatgcacaaattagcatcaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcactttgaaaacctgaggtgatattttttctgattaagatgcacaaattagcatcaaca 380
Query: 181 aaaatttcataacagcatatctattccactatatattacttctatattatgatgtcttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatttcataacagcatatctattccactatatattacttctatattatgatgtcttgc 440
Query: 241 attattcaaaactttaacaagaaaacacatattcattacttgtttcttcatacatttatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attattcaaaactttaacaagaaaacacatattcattacttgtttcttcatacatttatt 500
Query: 301 tcatcacacctaatgcaattataaaaatggaagaatgtttatttaaaattaaacacacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatcacacctaatgcaattataaaaatggaagaatgtttatttaaaattaaacacacta 560
Query: 361 ttaataacacgattttctctactctgtgaaatagatgacatcacagctattacaatata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaataacacgattttctctactctgtgaaatagatgacatcacagctattacaatata 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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