BAC Information

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BAC

Clone NameMSMg01-055M20
Chromosome3 (Build37)
Map Location 61,591,279 - 61,591,614
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040501, EG666853, P2ry1, Rap2b, LOC666891
Downstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055M20.T7 (MSMg01no055_m20.b1)MSMg01-055M20.TJ (MSMg01no055_m20.g1)
ACCAG283371AG283372
length699745
length of high quality
(start - end)
530 (46 - 575)336 (77 - 412)
definitionCHROMAT_FILE: MSMg01no055_m20.b1 PHD_FILE: MSMg01no055_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:18 2005CHROMAT_FILE: MSMg01no055_m20.g1 PHD_FILE: MSMg01no055_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGATATTCCTAGGCAAATGGGTGGAACTAGAAAATATCATCCTG
AGTGAGGTAACCCAATCACACCAGAACACTCATGGTATGCACTCACTGAT
AAGTGGATATTAGCCCAGAAGCTCGGAATACCAAGATACAATTCACAGAC
CACATGACACTCAAAAAGAAGACCAGAGTGTGGATACTTCGATCCTTCTT
AGAAGGGGGAACAAAATGCCCATGAGAGGAAATATAGAGACAAAGTGTGG
AGCAGATACTGTAGAAAAGGCCATCCAGAGACTACCCACCCATGTATTCA
TCTCATATATAGTCACCAAACCCAGACACTATTGTGGATGCCAAGAAGTG
CATGCTGACAGGAGCCTGATATAGCCATCTCCTGAGAGGTTCTGCCAGAG
TTTGACAAATACAGAGGCCAATGCTTACAGCCATCCATTGGACTGAGCAT
CCACTGGTAGTCCCCGATGGAAGAGTTAGAAAAAAGACTGAAGGAGCTGA
AGGGGTTTGCAACTCTATAGTAAGAACAACAATATCAATCAATGAGACTT
CCTAGAGCTCCCAGAGCCTGAACTACCAGCCAAGGAGTACATTATGGAGC
GATCTATGGCTCCAGCTGCATATGTAGCAGAGGATGCCCTTGTTGGGCN
CAATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATGCAAAGAAAATCATCATTAT
TTTGAATTTATTTATAAAAGATCACATTAAATTGAGGAAAATGGATAGCT
CTGGTTAAACAGCAAACATTGGGGGGGAAATGCACTGACTGAAAAAGAAA
ACTCTGAAATGTAGAATAAAAGACGTTGATACAGAGTGAGCATCCCAGAG
TTGGATATTCAAAACAAGTAGTGGGCAAAAACTTCATGCTTGAATATTAC
AGGGTGCTGTCCCTGTAAAATAATAACCTGAAGATGTATAAAGATGTTCT
CACTCCTTATAATGTCAAGATGCTACAGGCTTAAGATACCGGCTATACTA
CATGCTGTGAGGCAATATACCCACCAACGAATTCCCTGAGCCACTGTAAG
CATAGAACTCTTATTAACTACCAATAAGATAAAGAAAAATACCTAAGTGG
ATAGGGAAAGTAATGCTCAAAGGCAGAAAGTGGCCTATGCAGGTGTAATA
AAGAACCCACTTACTGATATTGAGCAGTGAGATACCAAACTTTGGCCAGA
ATCATCACTATACTAAATGATGATCTTTGGTACTCACCCAAAACTATACC
CAGCATTTCAATAGAAACCCTCAAGATACAGACCTTCTTTACACTTCACA
GTGAACTTTTCAAGTCCTTTTATCATATAAAATTCCCAGACAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_m20.g1 MSMg01no055_m20.g1 CHROMAT_FILE:
MSMg01no055_m20.g1 PHD_FILE: MSMg01no055_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:18 2005
         (336 letters)



>mm_chr3_61591079_61591814
          Length = 736

 Score =  634 bits (328), Expect = 0.0
 Identities = 334/336 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatgcaaagaaaatcatcattattttgaatttatttataaaagatcacattaaattgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatgcaaagaaaatcatcattattttgaatttatttataaaagatcacattaaattgag 260

                                                                       
Query: 61  gaaaatggatagctctggttaaacagcaaacattgggggggaaatgcactgactgaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gaaaatggatagctctggttaaacagcaaacattgggggggaaatgcactgcctgaaaaa 320

                                                                       
Query: 121 gaaaactctgaaatgtagaataaaagacgttgatacagagtgagcatcccagagttggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaactctgaaatgtagaataaaagacgttgatacagagtgagcatcccagagttggat 380

                                                                       
Query: 181 attcaaaacaagtagtgggcaaaaacttcatgcttgaatattacagggtgctgtccctgt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcaaaacaagtagtgggccaaaacttcatgcttgaatattacagggtgctgtccctgt 440

                                                                       
Query: 241 aaaataataacctgaagatgtataaagatgttctcactccttataatgtcaagatgctac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaataataacctgaagatgtataaagatgttctcactccttataatgtcaagatgctac 500

                                               
Query: 301 aggcttaagataccggctatactacatgctgtgagg 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcttaagataccggctatactacatgctgtgagg 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)