BAC Information

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BAC

Clone NameMSMg01-055N02
Chromosome3 (Build37)
Map Location 40,890,511 - 40,890,824
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055N02.T7 (MSMg01no055_n02.b1)MSMg01-055N02.TJ (MSMg01no055_n02.g1)
ACCAG283383AG283384
length707711
length of high quality
(start - end)
318 (43 - 360)411 (76 - 486)
definitionCHROMAT_FILE: MSMg01no055_n02.b1 PHD_FILE: MSMg01no055_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:19 2005CHROMAT_FILE: MSMg01no055_n02.g1 PHD_FILE: MSMg01no055_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAAGAAATCCATTCTCAGATTTATCTAAGAAATCTTTATTAAGTATTG
TGGTGAAAATATGAGAGCACAGTGCTGCCTACTACCCAGCCATGGTAATG
CCTAATACATCATGTATGTCAGCGCCTTGTATTTTAGACTGTTATATCAA
TGCCCTATTTCTGTTACCAGTCTTTGATCAGTCCAGCAAAGTAATTAGCG
CGACCTCAGCTATCTGTGAGTTGAAATAGTAGAGATGTATTTCTCATTTG
TGTGGTGCCATGTGTTAGCTAGCAGCTCTTTTCTGCCTCATCCTCACTCT
AGGACTCTGAATGATGGACCTCAGCCATCATTTGAAACAGAATTGGGGAC
CACCACATCCCCTTCTTCATTGATACTTGCTTTCCCCTTATTTTACAATT
CAGCTAGACCTATGGCTACTTTCACCAATGGAAATGTGTTGTTTCCAACT
TAAGACTTACAAAGACCTAGAAGGTATTGCCCTTTTGCTTTCCAAACCCT
GAGCAGGCTATTCTTCTAGAGAAGCCATGTGAAGAAACCTCTAAGCAAGA
TTAGATGATGCCGCACGAGTTGCCAACTCCAAACCAGGAAAGAAAATAAA
AGTTGCCTGGCTGTTTACAATTAAGCGGTACCTATGGGACAATAGTTTTT
TGTCTGT
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATAGAACATATGAAACATAAAGTT
TCATTCACAGTACTGGATGATTGCTGGGTGGTGGTACTTGCCTTTAATCC
TAGTACTCAGGAGGCAGAGAGGTAGGCTGATCTTTGAGTTTGAGGCCAGC
CTGGTCTACAGAGTGAGTTCAGGACAGCTAGAGCCACACAGAGAAACCTT
GCCTCAAAAAACAGAAAACAAAACAAAACAAAAAACAAAAAGGTACTGAG
TGATTTTTAAATTAAATTTAATTTTTTTGAGAAAGGGCTTTGTGTACCTT
AGGCTGGCCTGAAACTAAGTAGCTGAGGCAGATCTTGAATTTCTGATTCT
CCTGCCTCCTCTTCCTAAGTACTGTGACTACAGAACCTGTCTGGCTAGTC
CTTTATACTCTAGACTCACTTTTAAATTGTATAGTAATCCATAAATATAG
CTCACATAGCTAATTTAGCATTGACCTATCGAGTCTTGATTGTTCCCTTC
CCTTATCTTGACAAAACAATGTTCTATATGTATCTTGTCATTGTCTGTGT
CTTTCCATAGGGTAAATGCACAAATCAACTGTTATGCCACAGAGTATTAC
TGCTGGACTACCACTCGATTTTCTCTTTGCTAGCACAGGAAAGACCTCCT
TTCCTTGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_n02.b1 MSMg01no055_n02.b1 CHROMAT_FILE:
MSMg01no055_n02.b1 PHD_FILE: MSMg01no055_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:19 2005
         (318 letters)



>mm_chr3_40890307_40891024
          Length = 718

 Score =  580 bits (300), Expect = e-170
 Identities = 311/316 (98%), Gaps = 4/316 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagaaatcc--attctcagatttatctaagaaatctttattaagtattgtggt 62
           |||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattccaagaaa--cagattctcagatttatctaagaaatctttattaagtattgtggt 461

                                                                       
Query: 63  gaaaatatgagagcacagtgctgcctactacccagccatggtaatgcctaatacatcatg 122
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaaaatatgagagcagagtgctgcctactacccagccatggtaatgcctaatacatcatg 401

                                                                       
Query: 123 tatgtcagcgccttgtattttagactgttatatcaatgccctatttctgttaccagtctt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tatgtcagcgccttgtattttagactgttatatcaatgccctatttctgttaccagtctt 341

                                                                       
Query: 183 tgatcagtccagcaaagtaattagcgcgacctcagctatctgtgagttgaaatagtagag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgatcagtccagcaaagtaattagcgcgacctcagctatctgtgagttgaaatagtagag 281

                                                                       
Query: 243 atgtatttctcatttgtgtggtgccatgtgttagctagcagctcttttctgcctcatcct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 atgtatttctcatttgtgtggtgccatgtgttagctagcagctcttttctgcctcatcct 221

                           
Query: 303 cactctaggactctga 318
           ||||||||||||||||
Sbjct: 220 cactctaggactctga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)