Query= MSMg01no055_n10.b1 MSMg01no055_n10.b1 CHROMAT_FILE:
MSMg01no055_n10.b1 PHD_FILE: MSMg01no055_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:21 2005
(660 letters)
>mm_chr3_41520623_41521683
Length = 1061
Score = 907 bits (469), Expect = 0.0
Identities = 492/501 (98%), Gaps = 5/501 (0%)
Strand = Plus / Minus
Query: 165 atccttcaagaacaattgcaactagccaatcaagtaagtagcata-tttttttacttact 223
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1061 atccttcaagaacaattgcaactagccaatcaagtaagtagcatattttttttacttact 1002
Query: 224 aaatttaaagtcttcagaaatgttttaatctttttaaatttttaatatttgatattata- 282
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1001 aaatttaaagtcttcagaaatattttaatctttttaaatttttaatatttgatattataa 942
Query: 283 --atatcatttctcccttctcccctctcccactcaaatccctccaataccctttcttgct 340
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 941 tcatatcatttctcccttctcccctctcccactcgaatccctccaataccctttcttgct 882
Query: 341 ctttcaaattcatgacctttgttttcttcaatgggtgttatatgtatgtacatacataat 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ctttcaaattcatgacctttgttttcttcaatgggtgttatatgtatgtacatacataat 822
Query: 401 cctaaacataactattcagtccatataatgtcacttgaatgaatttcaggactgaccttt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 cctaaacataactattcagtccatataatgtcacttgaatgaatttcaggactgaccttt 762
Query: 461 tgttatttaacagagtaacaaaatttataacagttgattttgctgtgacttaatacttgt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tgttatttaacagagtaacaaaatttataacagttgattttgctgtgacttaatacttgt 702
Query: 521 aaataattccctcactatttgttgcaaatataacttcaaatatattttaattgaatcata 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aaataattccctcactatttgttgcaaatataacttcaaatatattttaattgaatcata 642
Query: 581 ttgcattttgaacatttttgtcctttaag-ataattaattttaagccgggtgtggtggca 639
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 641 ttgcattttgaacatttttgtcctttaagaataattaattttaagccgggcgtggtggca 582
Query: 640 caagcctttaatctcagcact 660
||||||||||||||| |||||
Sbjct: 581 caagcctttaatctcggcact 561
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1061
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1051
Effective search space: 683150
Effective search space used: 683150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_n10.g1 MSMg01no055_n10.g1 CHROMAT_FILE:
MSMg01no055_n10.g1 PHD_FILE: MSMg01no055_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:21 2005
(438 letters)
>mm_chr3_41430479_41431315
Length = 837
Score = 799 bits (413), Expect = 0.0
Identities = 432/439 (98%), Gaps = 3/439 (0%)
Strand = Plus / Plus
Query: 1 atagtaaaatagaatcttaagaattataaaaatgaattaagagtaaaaa-tgagacatta 59
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 atagtaaaatagaatcttaagaattataaaaatgaattaagagtaaaaaatgagacatta 260
Query: 60 aatctccaaatcttataacctgaaatatcaaattctagggatttaattaaacctcttgaa 119
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctccaaatcttagaacctgaaatatcaaattctagggatttaattaaacctcttgaa 320
Query: 120 aatattatgttcttccaaggagggggaaaaaggaattaaaaatagacacattgatgaagg 179
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 aatattatgttcttccaaggagggggaaaaaggaattaaaaatagaca--ttgatgaagg 378
Query: 180 cagtgagttcttctcagctggctttattctctactgaatctcaaatataggattatagtt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagtgagttcttctcagctggctttattctctactgaatctcaaatataggattatagtt 438
Query: 240 ttctacttacaagaagctgtcactgttctgttttccaataaccctcaaaacagaatggaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttctacttacaagaagctgtcactgttctgttttccaataaccctcaaaacagaatggaa 498
Query: 300 aatgcttatgcaaaatgacacaagccttccccattctcggcaggcttctccatgtcaata 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 499 aatgcttatgcaaaatgacacaagccttccccattctcagcaggcttctccatgtcaata 558
Query: 360 cgtttggcacaacagttttcccaactctacagttctgtcagtgaactatgaatatgttta 419
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cgtttggtacaacagctttcccaactctacagttctgtcagtgaactatgaatatgttta 618
Query: 420 aatattttccagattcatc 438
|||||||||||||||||||
Sbjct: 619 aatattttccagattcatc 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 837
Length adjustment: 9
Effective length of query: 429
Effective length of database: 828
Effective search space: 355212
Effective search space used: 355212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
