BAC Information

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BAC

Clone NameMSMg01-056H14
Chromosome3 (Build37)
Map Location 13,487,033 - 13,487,318
singlet/doubletsinglet
Overlap geneLOC100039861, 0710005M24Rik
Upstream geneLOC100039798, EG668033, LOC668037, LOC100039823
Downstream geneLOC100041679, LOC100041667, LOC100039882, EG622229, LOC668062, Slc7a12
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056H14.T7 (MSMg01no056_h14.b1)MSMg01-056H14.TJ (MSMg01no056_h14.g1)
ACCAG283876AG283877
length722762
length of high quality
(start - end)
286 (74 - 359)154 (74 - 227)
definitionCHROMAT_FILE: MSMg01no056_h14.b1 PHD_FILE: MSMg01no056_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:09 2005CHROMAT_FILE: MSMg01no056_h14.g1 PHD_FILE: MSMg01no056_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAGXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAGGATCCGCGGAAT
TCACACATTTTCCATGCATTCACCATAGGCCTAGAGCCCAGCAAGCGTTC
GGGAAGGATTTTGCTTTACTATTTGGCTTTGTTCGAAAAGTCTGGTTCAT
TGGTCTTAAACATTATTTAAGTTCTATATAATGCCATAGTACTGTGTAAA
TATGTAATACAGAAAAATATTTTCAGAAGGAATTTTACATATATTCAGGA
TGATTTCAGAACCAAGCCAGCAGGGCTTATGCGATTGAGTCATATTTTGT
CTGATAATTCCAGACCTGACATTTGAACCTCTTTTCTATTTTATGAGATG
GCATTTGGCATTTCAGCTCGGCTTAGCATTGAAAACTCTATGTAGCCTAT
AAACATTTAGCTAAATAATTGTTCAGCCTCTCTTTAAGCTCCAGGTTAAA
TTGATACCACAATGTTTTAATAATAGCTTTTTATAATATGTATTTCTTTA
TAAGCAATGTCTAATGTACAGGAACAGCGTCCCTCAAGCATGTGCTGAAA
GTTGTCTATTAATAGATTGTTAGTTCAGTGATTGAATAATTGTGTAATTA
TTTTTTTTCAGTCACATAACAAATGCTGGTAATTTTGTGATCATACCCTT
ATGGTTCATGATCGTAATCTTAAATTATTTTTCTTTCATCACACTATTGC
CTTGGATTTTTTTCACTGATTN
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTA
ATGGGGTTATTTGTTTTTCTGCAGTCCACCTTCTTTAGTTCTTTATATAT
ATTGGATATTAGTCCTCTATCTGGTTTAGGATAGGTAAAGATCCTTTCCC
AATCTGTTGGTGGCCTTTTTGTCATATTGAGGATGTCTTTTGCCTTACAG
AAGCTTTGAAATTTTATGATGTCCCATTTGTCAATTCTCGATCTTACAGA
AAATGACATTGCTGCTTTATTCATCAATTTTTCCCATGAGCCCGTATCTT
TGTATCTTTTCTCATCTTTCTCCTCTATGATTTACACTGTTTCTGTTTTT
ATATGGAGTTCCTTAGACCACTTAGGTACGACCTTACTATAAGTCTAAAG
TCGTTGTATTTATTTTGATTTCTTTCCATGATTACCGCCCACATGTCGCA
ACCACAATCTTTTACACATGACCCCTTATGCTGCTACGCGCAGTGCTTCG
TCCCATAATGACATAAAATCAACACATCCCCATTCGCGCCCCCATTACCT
CACTGACACCCTCAAACACACTCGCTCACCACGCAGATCTNATTCGCCAA
AATGCAAGACAACAACGACGCTCCNATAACGCCAAGACACCNGCTAAGAA
AAGCTGCTNTATACCTATTCGTGCCCGATTTCNCCCGCCAGCCTCTTTCN
CATTATNTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_h14.b1 MSMg01no056_h14.b1 CHROMAT_FILE:
MSMg01no056_h14.b1 PHD_FILE: MSMg01no056_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:09 2005
         (286 letters)



>mm_chr3_13486833_13487518
          Length = 686

 Score =  507 bits (262), Expect = e-148
 Identities = 280/286 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataggcctagagcccagcaagcgttcgggaaggattttgctttactatttggctttgtt 60
           |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||
Sbjct: 201 cataggcctagagcccagcaagcgttcgggaaagattttgctttattatttggccttgtt 260

                                                                       
Query: 61  cgaaaagtctggttcattggtcttaaacattatttaagttctatataatgccatagtact 120
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 261 cgaaaagtctggttcattggtcttagacattacttaagttctatataatgccatagtact 320

                                                                       
Query: 121 gtgtaaatatgtaatacagaaaaatattttcagaaggaattttacatatattcaggatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtaaatatgtaatacagaaaaatattttcagaaggaattttacatatattcaggatga 380

                                                                       
Query: 181 tttcagaaccaagccagcagggcttatgcgattgagtcatattttgtctgataattccag 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tttcagaaccaagccagcagggcttatgctattgagtcatattttgtctgataattccag 440

                                                         
Query: 241 acctgacatttgaacctcttttctattttatgagatggcatttggc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctgacatttgaacctcttttctattttatgagatggcatttggc 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)