BAC Information

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BAC

Clone NameMSMg01-056I15
Chromosome3 (Build37)
Map Location 35,362,190 - 35,362,631
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056I15.T7 (MSMg01no056_i15.b1)MSMg01-056I15.TJ (MSMg01no056_i15.g1)
ACCAG283926AG283927
length699694
length of high quality
(start - end)
403 (73 - 475)442 (72 - 513)
definitionCHROMAT_FILE: MSMg01no056_i15.b1 PHD_FILE: MSMg01no056_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:14 2005CHROMAT_FILE: MSMg01no056_i15.g1 PHD_FILE: MSMg01no056_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCTTTGTTTCCCTCAGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGGAGTCCACCTTCTTGCACTTCTTTATATATATTGGATAGTAGTCC
CCTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCC
TTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTT
AAGAGGTCCCATTTATCGATTCTTGGTCTTACAGCACAAGCCATTGCTGT
TCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTC
ATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCG
CATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACTATTTGTTGAAAA
TGCTGTCTTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATTAT
GTGTACATAAGTGTGTGTTTTCATCTCTGGGTCTTCAATTCTGTTCCATT
GATCTACTTGTCTGTCACTATACCCGTACCCTGCTGTTTTGATCTCAACT
GCTCTGCACTAATGCTCTAAGTTCGATTTGGTGTTTTCATCAGACCCTC
CAATGAAGTGGGAGGCCTGGCGGCCGCCTGTTTCAAAAATTGAGGTGAAC
TATAGATTTTCAGCGGAATTCAAAGAAACCCCAATATCCAGGGGCTCTTG
AACTTCCCTTTGCCCACCTTTTCCTTGGACTGACCTGCCTTATCCATTTC
CTGTCTTCTCCCTAGAAACACAATGAAACATTTTATATCCAGCAGCAGCA
CATCTCCAAGTTCCCCTAAGGACAAGCAATACCTAGCTGCTGCTGACATC
TGTGTGTGCTACCGACCTGCTACGCACTGGGCTTACATTTCACCATGTGC
CCACCACAACTTGAACTTGCTGCAGAGCTGGCTTCTCTCTCCCTTCTGTG
ACTGTCACACCTGCAAGTTGTTCTTTAGTGCAGAGCACTTTGGCCAAGCA
GGTCTGAGCAAGCCAATGGCAAAGAGAAAACAAGCTTCGAGGTAGATTTG
ATGGCATCAAGAGGCCTCCTTCTGTAAATTCAGTATGGATGGTGCACTCC
TGAGAAAGATAGGGACAATAGAGAGGGAAGCAGACTAGGAATGTCTATTA
TGGAAAGTTGTGTAGACAATTCACATTATCTTTACTGGTAACATGTTTGA
GAAAGATTGAAGTCAGCATTTTACCTTTTGTCTGAATGCTGCCGGTGGTA
GGCAAGCTACCACGAAATGGTAAAACCAGCTACGCCTTTCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_i15.g1 MSMg01no056_i15.g1 CHROMAT_FILE:
MSMg01no056_i15.g1 PHD_FILE: MSMg01no056_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:14 2005
         (442 letters)



>mm_chr3_35361990_35362831
          Length = 842

 Score =  777 bits (402), Expect = 0.0
 Identities = 432/442 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaaaccccaatatccaggggctcttgaacttccctttgcccaccttttccttggact 60
           |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct: 201 aaagaaaccccaatatccaggggctcttaaacttccctttgcccagcttttccttgggct 260

                                                                       
Query: 61  gacctgccttatccatttcctgtcttctccctagaaacacaatgaaacattttatatcca 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gacctgccttatccatttcctgtcttatccctagaaacacaatgaaacattttatatcca 320

                                                                       
Query: 121 gcagcagcacatctccaagttcccctaaggacaagcaatacctagctgctgctgacatct 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagcagcaaatctccaagttcccctaaggacaagcaatacctagctgctgctgacatct 380

                                                                       
Query: 181 gtgtgtgctaccgacctgctacgcactgggcttacatttcaccatgtgcccaccacaact 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gtgtgtgctaccgacctgctacacactgggcttacatttcaccatgtgcccaccacaacc 440

                                                                       
Query: 241 tgaacttgctgcagagctggcttctctctcccttctgtgactgtcacacctgcaagttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaacttgctgcagagctggcttctctctcccttctgtgactgtcacacctgcaagttgt 500

                                                                       
Query: 301 tctttagtgcagagcactttggccaagcaggtctgagcaagccaatggcaaagagaaaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttagtgcagagcactttggccaagcaggtctgagcaagccaatggcaaagagaaaac 560

                                                                       
Query: 361 aagcttcgaggtagatttgatggcatcaagaggcctccttctgtaaattcagtatggatg 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 aagcttcgaggtagatttgatggcatcaagaggtctccttctgtaaattcagtatggatg 620

                                 
Query: 421 gtgcactcctgagaaagatagg 442
           | |||||||||||| |||||||
Sbjct: 621 gagcactcctgagagagatagg 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)