GGCCGCTATACGACTCACTATCCCGAAGAGGATCCGCGGAATTCTTTCTT
TGCTCCCCAAATTAATCTACTTGGTCCTTATTTGAATTATACTATTATTT
TATTTTTGCCCGGTTTTCATTATAGTTCTCTTATTTTCATTTAGAGATAT
CAAGTTAAATACTTTTATATGTGAAGTTGGAAAATGTCAGGTTCTAGATT
TAAATGCTGTTGTAGCAGACTTGTTGTTAACATAAAACTACATTGGGATT
GGTTATGACCAAGCAAAAAAGTTATACATTTATTTGTTATACCAACTTCA
AAGTTTATGCTGATTTGACATCTAATCATTTCTCTTTATTAAAGCTATTT
TATAGATCTCAGCAGTCTACTTTATTAATTTCTGGTACATGAACTTTATG
GAGGGAGTATTTTAAAAGCTATTCAGTATCCTGGTTTTCATTGAAGAGAC
TTGTCTGATTAGAACCAGAAAATTGGCAAGTTATATACAAAATACGAATT
CATATTTAAAGTTATATTACTAGCATATAGCATAACTAACATAAAATAAA
ATTAACCCACTCATGATTTAGAATACACTATTATAAATGAAATGATCCAT
GATGTTCCTATATATAAAATATGTGAAGAATATTTATTATAGGCCAAACA
TAATAAATTCTATAGGCTAATACTTGTAAATATAATAGATGACTATAG

CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTACCGCGAGAACAGGGAACCGG
GAGGAAGCAGAAGTAATATATTTTGAAAGGCTTAATCTGATCTCTTGCCT
GTCTTCAAAGGAAGCGTCATTTGTAAAAGACACGCATGCTCCTGAAGAGA
GGGCCCCTATTAGGCAATGCAGAAATAATAAAAGACTGTCTGTCCCCAGC
CTCCGGAACAGGGAGCAAGGAGGTAAAGGGACTCGCTCCATGCTCAGTTG
GGAGAGACTGCTGGAGCTGCTCATAACACCCTGTCTGTGGGTTCGTTCCT
GAACCCTCTGTGCAGCGGAGCACAGTCCCTTCCCTTTGTTTCTGCTATAA
ATTAAGATATGTCTGACAAGGGGCTTCCACGTGGAACAGCTAAGTTAGAA
CTCAACCGAGCAGAGTGGACTCTCATCCCCCATCACTTCTCTTGCCTCTC
AGAAGTTTCCATCTTTTCTTCAAGTTAGGAACTGTCTTCACACGTCTTGT
TTTCAAGGAGGGTACACATCTAAGCTGCCCACCAGCTTCCAGAGTTCACA
ACCAACGGAGCCATTTCTAAGGAGCAGGGAACAAGAAGAAAATCTCTACC
CTTGATGGTGATCTCACTGCCTGTCCATCCTTTCTCTAAAGCTGTGATGA
CTGCATTTGN

Query= MSMg01no056_i22.b1 MSMg01no056_i22.b1 CHROMAT_FILE:
MSMg01no056_i22.b1 PHD_FILE: MSMg01no056_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:15 2005
         (550 letters)



>mm_chr3_29941528_29942477
          Length = 950

 Score = 1025 bits (530), Expect = 0.0
 Identities = 545/550 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaattaatctacttggtccttatttgaattatactattattttatttttgcccggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 201 ccaaattaatctacttggtccttatttgaattatactattattttatttttgtttggttt 260

                                                                       
Query: 61  tcattatagttctcttattttcatttagagatatcaagttaaatacttttatatgtgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattatagttctcttattttcatttagagatatcaagttaaatacttttatatgtgaag 320

                                                                       
Query: 121 ttggaaaatgtcaggttctagatttaaatgctgttgtagcagacttgttgttaacataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggaaaatgtcaggttctagatttaaatgctgttgtagcagacttgttgttaacataaa 380

                                                                       
Query: 181 actacattgggattggttatgaccaagcaaaaaagttatacatttatttgttataccaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actacattgggattggttatgaccaagcaaaaaagttatacatttatttgttataccaac 440

                                                                       
Query: 241 ttcaaagtttatgctgatttgacatctaatcatttctctttattaaagctattttataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaaagtttatgctgatttgacatctaatcatttctctttattaaagctattttataga 500

                                                                       
Query: 301 tctcagcagtctactttattaatttctggtacatgaactttatggagggagtattttaaa 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctcagtagtctactttattaatttctggtacatgaactttatggagggagtattttaaa 560

                                                                       
Query: 361 agctattcagtatcctggttttcattgaagagacttgtctgattagaaccagaaaattgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctattcagtatcctggttttcattgaagagacttgtctgattagaaccagaaaattgg 620

                                                                       
Query: 421 caagttatatacaaaatacgaattcatatttaaagttatattactagcatatagcataac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caagttatatacaaaatacgaattcatatttaaagttatattactagcatatagcataac 680

                                                                       
Query: 481 taacataaaataaaattaacccactcatgatttagaatacactattataaatgaaatgat 540
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taacataaaataaaattaaaccactcatgatttagaatacactattataaatgaaatgat 740

                     
Query: 541 ccatgatgtt 550
           ||||||||||
Sbjct: 741 ccatgatgtt 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no056_i22.g1 MSMg01no056_i22.g1 CHROMAT_FILE:
MSMg01no056_i22.g1 PHD_FILE: MSMg01no056_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:15 2005
         (602 letters)



>mm_chr3_30042453_30043454
          Length = 1002

 Score = 1094 bits (566), Expect = 0.0
 Identities = 593/602 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaccgcgagaacagggaaccgggaggaagcagaagtaatatattttgaaaggcttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 agtaccgcgagaacagggaaccgggaggaagcagaagtaatatattttgaaaggcttaat 743

                                                                       
Query: 61  ctgatctcttgcctgtcttcaaaggaagcgtcatttgtaaaagacacgcatgctcctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctgatctcttgcctgtcttcaaaggaagcgtcatttgtaaaagacacgcatgctcctgaa 683

                                                                       
Query: 121 gagagggcccctattaggcaatgcagaaataataaaagactgtctgtccccagcctccgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gagagggcccctattaggcaatgcagaaataataaaagactgtctgtccccagcctccgg 623

                                                                       
Query: 181 aacagggagcaaggaggtaaagggactcgctccatgctcagttgggagagactgctggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 622 aacagggagcaaggaggtaaagggactcgctccatgctcagttgggagagactgctggaa 563

                                                                       
Query: 241 ctgctcataacaccctgtctgtgggttcgttcctgaaccctctgtgcagcggagcacagt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctgctcaaaacaccctgtctgtgggttcgttcctgaaccctctgtgcagcggagcacagt 503

                                                                       
Query: 301 cccttccctttgtttctgctataaattaagatatgtctgacaaggggcttccacgtggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cccttccctttgtttctgctataaattaagatatgtctgacaaggggcttccacgtggaa 443

                                                                       
Query: 361 cagctaagttagaactcaaccgagcagagtggactctcatcccccatcacttctcttgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 cagctaagttagaactcaaccgagcagagtggactctcatcccccatcatttctcttgcc 383

                                                                       
Query: 421 tctcagaagtttccatcttttcttcaagttaggaactgtcttcacacgtcttgttttcaa 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tctcagaagtttccatctcttcttcaagttaggaactgtcttcacacgtcttgttttcaa 323

                                                                       
Query: 481 ggagggtacacatctaagctgcccaccagcttccagagttcacaaccaacggagccattt 540
           ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 322 ggagggtacacatttaagctgcccaccagcttccagagtttacaaccaacgtagccattt 263

                                                                       
Query: 541 ctaaggagcagggaacaagaagaaaatctctacccttgatggtgatctcactgcctgtcc 600
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 262 ctaagaagcagggaacaagaagaaaatctctacccttgatggcgatctcactgcctgtcc 203

             
Query: 601 at 602
           ||
Sbjct: 202 at 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)