Query= MSMg01no056_l19.b1 MSMg01no056_l19.b1 CHROMAT_FILE:
MSMg01no056_l19.b1 PHD_FILE: MSMg01no056_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:29 2005
(289 letters)
>mm_chr3_107464668_107465356
Length = 689
Score = 503 bits (260), Expect = e-147
Identities = 284/292 (97%), Gaps = 4/292 (1%)
Strand = Plus / Minus
Query: 1 gaca-ggtttttctgtgtagccctggctgtcctgg-agctcactttgtacaccaggctgg 58
|||| ||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct: 522 gacagggtttctctgtgtagccctggctgtcctggca-ctcactttgtagaccaggctgg 464
Query: 59 cctcgaactcagaaatccg-ctgcctctgcctcccgagtgctgggagaaggagaagagtt 117
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 463 cctcgaactcagaaatccgcctgcctctgcctcccgagtgctgggagaaggagaagaatt 404
Query: 118 ctgtacctaacaatgagtcctaagattattatctggccagcaaatgcacacacattcata 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctgtacctaacaatgagtcctaagattattatctggccagcaaatgcacacacattcata 344
Query: 178 tagatagacctgcgtgcattcacacacataaaccaatttgtgaaactgggcgttctatag 237
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tagatagacctgcatgcattcacacacataaaccaatttgtgaaactgggcgttctatag 284
Query: 238 aggatagaaatttactctcatttctggaggctgaaatgtccaggatgaaata 289
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aggatagaaatttactctcatttctggaggctgaaatgtccaggatgaaata 232
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no056_l19.g1 MSMg01no056_l19.g1 CHROMAT_FILE:
MSMg01no056_l19.g1 PHD_FILE: MSMg01no056_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:29 2005
(298 letters)
>mm_chr3_107362602_107363301
Length = 700
Score = 569 bits (294), Expect = e-166
Identities = 298/300 (99%), Gaps = 2/300 (0%)
Strand = Plus / Plus
Query: 1 tctgccctgaagctttgtggatgaaatgtgataaagtaaactcaagagtaaagaagatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgccctgaagctttgtggatgaaatgtgataaagtaaactcaagagtaaagaagatgc 260
Query: 61 ccatagaactaacggggtgcccacccctctccacccccccc--aacatccagatccagga 118
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ccatagaactaacggggtgcccacccctctccaccccccccccaacatccagatccagga 320
Query: 119 tcatagattgagcaactgcgggcttgagctcatctctagaatttgcagttggtttagata 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatagattgagcaactgcgggcttgagctcatctctagaatttgcagttggtttagata 380
Query: 179 agagcaactcattaaggtctgacagtgggtcggtggccagggaatagatagcctggctaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagcaactcattaaggtctgacagtgggtcggtggccagggaatagatagcctggctaa 440
Query: 239 acccaggctgagttcccaagctcgctggctacctggtaggatggctgctgtccatcagat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acccaggctgagttcccaagctcgctggctacctggtaggatggctgctgtccatcagat 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 700
Length adjustment: 9
Effective length of query: 289
Effective length of database: 691
Effective search space: 199699
Effective search space used: 199699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
