Query= MSMg01no056_m18.b1 MSMg01no056_m18.b1 CHROMAT_FILE:
MSMg01no056_m18.b1 PHD_FILE: MSMg01no056_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:33 2005
(651 letters)
>mm_chr3_100724883_100725930
Length = 1048
Score = 1174 bits (607), Expect = 0.0
Identities = 636/647 (98%), Gaps = 3/647 (0%)
Strand = Plus / Minus
Query: 5 gaattctacagtacccgaagttgtcagggttgcggggggtggcctacagagcaagtttgg 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gaattctacagtaacagaagttgtcagggttgcggggggtggcctacagagcaagtttgg 725
Query: 65 catttgtttttacaatcaaggggagctcctggttggtcacaatggggcagtggaggatgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 catttgtttttacaatcaaggggagctcctggttggtcacaatggggcagtggaggatgt 665
Query: 125 cactgggacaagtcccttgtaggtccgactagttaaaaagttgggcacacctggtccctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cactgggacaagtcccttgtaggtccgactagttaaaaagttgggcacacctggtccctg 605
Query: 185 agcataattatttctttgacgccttaaagaatttgccaagagtctcggattcattcattt 244
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 604 agcataattatttctttgacgccttaaagaatttgccaagagtctcagattcattcattt 545
Query: 245 ggagactgtttcctacacatggggtctaaggcactgactgatctctgaatccaaaaattg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ggagactgtttcctacacatggggtctaaggcactgactgatctctgaatccaaaaattg 485
Query: 305 taacagcatggctccgtagttgctatctgttcacattcttcagatgcgtaagcctctgtc 364
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 484 taatagcatggctccgtagttgctatctgttcccattcttcagatgcgtaagcctctgtc 425
Query: 365 tatctcactgttttcctttacagtcttccatatatgatttcaacccatgcatcactgttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tatctcactgttttcctttacagtcttccatatatgatttcaacccatgcatcactgttt 365
Query: 425 cagggacctctttattagagatgtcatagtataggcatagctgtcgaagcctatgctttt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cagggacctctttattagagatgtcatagtataggcatagctgtcgaagcctatgctttt 305
Query: 485 acgaagtatgggccctgggtggaaagagccccaaactatgaaaagatgaaatgaaaagaa 544
|||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 304 acgaagtatgggccttcggtggaaagagccccaaactatgaaaagatgaaattaaaagaa 245
Query: 545 aaaaaaaaaagaattatctgactcttcgtaaaatatgttaaagtagagatgtagctcact 604
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aaaaaaa---gaattatctgactcttcgtaaaatatgttaaagtagagatgtagctcact 188
Query: 605 gatccagtatttgcttagtatgttgagactctgggttctgtctgtgg 651
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gatccagtatttgcttagtatgttgagactctgggttctgtctgtgg 141
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1048
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1038
Effective search space: 665358
Effective search space used: 665358
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no056_m18.g1 MSMg01no056_m18.g1 CHROMAT_FILE:
MSMg01no056_m18.g1 PHD_FILE: MSMg01no056_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:33 2005
(555 letters)
>mm_chr3_100654274_100655228
Length = 955
Score = 953 bits (493), Expect = 0.0
Identities = 548/587 (93%), Gaps = 33/587 (5%)
Strand = Plus / Plus
Query: 2 cacaaggaacgccaccttgagcccggtgtgaaattccctaactcgactagatttcgattt 61
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cacaaggaacgccaccttgaccccggtgtgaaattccctaactcgactagatttcgattt 240
Query: 62 tgatggaagtctgagaaaacgtctgccaggagtctgtgacttgcatgagctacttggagg 121
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 241 tgatggaagtctgagaaaacgtctgccaggagtctatgacttgcatgagctacttggagg 300
Query: 122 gttgcctggataggaaaaggctcagcaggcccagtcatcctggcctcttttcttctgaag 181
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 301 gttgcctggataggaaaaggctcagcagccccagtcatcctggcctcttttcttctgaag 360
Query: 182 ccctg---------------------aacgttcctgagaggctcaggcccagggtctgcc 220
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 361 ccctgggctgtctgctacagacactgaacgttcctgagaggctcaggcccagggtctgcc 420
Query: 221 agaactgatgtattttattaaaagatgagagtatctttttgtccttgtttcaaataagat 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agaactgatgtattttattaaaagatgagagtatctttttgtccttgtttcaaataagat 480
Query: 281 atagctaaagagtggatgagactaagaaatgtgaaactacagagctgattaattgctatt 340
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 481 atacctaaagagtggatgagactaagaaatgtaaaactacagagctgattaattgctatt 540
Query: 341 ctatctctgggttggtgagaggcaaagcttataggtttctagactaagggaagtttggag 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctatctctgggttggtgagaggcaaagcttataggtttctagactaagggaagtttggag 600
Query: 401 aagccatgttttcagtcctatttagttctcaggccccagtggaatctgcttcttagtatc 460
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 601 aagccatgttttcagtcctatttagttctcaggccccggtggaatctgcttcttagtatc 660
Query: 461 tctggataactcttccttcctcccccttcccctcccc------------tccccctcccc 508
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 661 tctggataactcttccttcctcccccttcccctccccctccccctcccctccccctcccc 720
Query: 509 tcccctccctgctctgcctcttaagccttgaagtgtgtgctctgcac 555
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tcccctccctgctctgcctcttaagccttgaagtgtgtgctctgcac 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
