BAC Information

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BAC

Clone NameMSMg01-056N02
Chromosome3 (Build37)
Map Location 29,625,172 - 29,625,538
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
Downstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056N02.T7 (MSMg01no056_n02.b1)MSMg01-056N02.TJ (MSMg01no056_n02.g1)
ACCAG284130AG284131
length729787
length of high quality
(start - end)
370 (45 - 414)---
definitionCHROMAT_FILE: MSMg01no056_n02.b1 PHD_FILE: MSMg01no056_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:34 2005CHROMAT_FILE: MSMg01no056_n02.g1 PHD_FILE: MSMg01no056_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTGCCGCCTGCATTAGAATATATGAATTGTTTGTAGGGTTGAGAT
CAGAAGTCACCCAGGGGATTGGAATACACAGAGGATTATCATCCATCTTA
AATTTTCAGTTCTGATGGGAAGACTTCGAGTAGACATTGTAACAAACACA
TCAACGTGTTCCATGTCTTTGGTTGTAAGAAACGTGGAGACATGCAAATC
CCAGAATCAAAAATTCTAGAGAATGGTGCTTCCACGCAGGGAGTGGCCCA
CTAGGCTGAAGTGTGAGCCATTTGAGAGTGAATGCGCTCCGTTGCTCATG
CACAAGAGGATCGGTTGCCTGTCCTTATGGAGTCATTGACACATATGGAA
TAGCGGGGCAAATCCCCAGCGCTATAAACAGTCTGAAGTTTCACACAGGT
GACTCTGGTTTCTCATGTACGCTTTGGGCCTATGATCTTTATCCTTATCC
CAGATTCAGCTCTTACTTTATCCTGGCTTTCCGAACTACTAGTCTGACAC
TCTGAATACTGTCACTAAGGTGATTAAATTGTCCTTCATGTGGTTTTAAG
ACTCTTTTTCTATAAAAACTTCTAAGGTATAGGGATAATATATAGCCAAA
CCTTTTTTTAAAACTTTTGTATGGTCTTTTTCCTTTTGGTTCTATTCTTT
AAAGTTTATCGATGGGTTATTGTTAGGGA
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACCAGGAATGGGAGTGGGTGGGT
TGGGGATCAGGGAGAGGGGAAAGGGGTGGGGTTTGGNGCCGGGGGTGGTG
CCGGGGGGGTGGGTGTTCGCGCGTGCGTGCCCGGGGGGCCGCGGCGGGGG
GCGCGGGGCGGCTGGCCGGTCGGGATGAAGTCTTAACTTCTTTGTCTCCA
TTCTGTCCATCAAGCAGAGAAAAGAAAAACAACAAGAGACGACAAAATAA
ACAACAAACAACTACCCCAAACATTTCATTATCTTATATAACGAAGGACC
GACGAGCAAGCAACGCCAGCCGGCGAGCTGTTGGGCCGCAGCGGGAGACG
CGAAGGGACCGGCGCGCGGATGCGAGGGGCGACCCGCCGCGCCGGCGTGC
CGTAGGGACCGGAAGGGGGCAAAAGAACGGAGGCGGTAAATATGGATAGA
TTGGATATAAAACGAATAATAAAATATAAATGTTAATAAAAAAGAAAAAA
ATTAAATAAATAATAAAATAAAAAATAATAAAAGAGAAAGAGAAAGTAAT
TAATAAGGAGAAGAAATTGAGGTTGAAAATGTGGAGGGACTGTCAGGTAA
TATGGTGGGAGCGGGAAGAAAAAAAGAGAATGGTAAAAAGAATTGTAAGG
GAAACATAAAAAAGAATAAAAAAACAGACAGACAAACAAAATGAGAACAA
TCGAACAGGGTCGACACAGAAAGCGAGAACCACAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_n02.b1 MSMg01no056_n02.b1 CHROMAT_FILE:
MSMg01no056_n02.b1 PHD_FILE: MSMg01no056_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:34 2005
         (370 letters)



>mm_chr3_29624968_29625738
          Length = 771

 Score =  619 bits (320), Expect = 0.0
 Identities = 356/368 (96%), Gaps = 3/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgccgcctgcattagaa-tatatgaattgtttgtagggttgagatcagaagt 63
           |||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattctgtgacgcctggattagaattatatgaattgtttgtagggtagagatcagaagt 264

                                                                       
Query: 64  cacccaggggattggaatacacagaggattatcatccatctt-aaattttcagttctgat 122
           ||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 265 cacccaggggattggaatatacagaggattatcatccatctttaaattt-cagttctgat 323

                                                                       
Query: 123 gggaagacttcgagtagacattgtaacaaacacatcaacgtgttccatgtctttggttgt 182
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 gggaagacttcgagtagacattgtaacaaacacatcaacgtgttccatatctttggttgt 383

                                                                       
Query: 183 aagaaacgtggagacatgcaaatcccagaatcaaaaattctagagaatggtgcttccacg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagaaacgtggagacatgcaaatcccagaatcaaaaattctagagaatggtgcttccacg 443

                                                                       
Query: 243 cagggagtggcccactaggctgaagtgtgagccatttgagagtgaatgcgctccgttgct 302
           |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 444 cagggagtggcccactaggctgaaatgtgagccatttgagagtgaatgtgctccgttgct 503

                                                                       
Query: 303 catgcacaagaggatcggttgcctgtccttatggagtcattgacacatatggaatagcgg 362
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 504 catgcacaagaggatcagttgcctgtccttatggagtcattgacacatatggaatagtgg 563

                   
Query: 363 ggcaaatc 370
           ||||||||
Sbjct: 564 ggcaaatc 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 771
Length adjustment: 9
Effective length of query: 361
Effective length of database: 762
Effective search space:   275082
Effective search space used:   275082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)