BAC Information

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BAC

Clone NameMSMg01-057B06
Chromosome3 (Build37)
Map Location 58,198,132 - 58,198,449
singlet/doubletsinglet
Overlap genenone
Upstream geneTm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik
Downstream geneTsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057B06.T7 (MSMg01no057_b06.b1)MSMg01-057B06.TJ (MSMg01no057_b06.g1)
ACCAG284326AG284327
length736712
length of high quality
(start - end)
327 (42 - 368)205 (73 - 277)
definitionCHROMAT_FILE: MSMg01no057_b06.b1 PHD_FILE: MSMg01no057_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:54 2005CHROMAT_FILE: MSMg01no057_b06.g1 PHD_FILE: MSMg01no057_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGCGGAA
TTCTCTATTTACATATCCTACTTTTGATTACAACAAGAAAATAATAGGAA
ATAAAATTATTTGGATAAATAAAAGTGTAATTACAGGATGACACCAGACT
GTCCAGATGTAGGAAGATTTTCACAGGGTGATACCAACTGCTTGTATTGT
GAAGTCAAGACTTTGATTTGACTGGAAATTGATGGTTGCTGGATGGGAGA
GGGTCGGATTTCTTCGGGGATGCAGGCTGGGAGTGGCTACCCATGGTTCT
GTAGATGTCCCTTCACTAATGGTCACAATAGGTAGTGATGATTTACATGG
ATTCTGGATGTTGCAGGCAGATGCAGGGGTAGGGGCAAGGCCAGAGAGAG
TTAGAGGCACATGCTTATACCCCTCCTTTCTTCTTTTTCTTCCATCCCTT
TTTTTATTTTCCATTTCCTTTCTTTATTTCTATCTCTATCTCCCCTCCTT
CCTTCCTTTACCTTCCCCCCCTCCTTCCCTCCTTTTTTACCTATTCCCCT
TACCACTTTTCCCTCTTTCCCTCTCCCCCCTTTCCTTCTCTTCTTCCCTT
ATTTTCCTTTATCCCCCCACCCTTTCTCTCTGCTTTCCCCTCCTGTCTTT
CTCCCTTATTTTCTATCCACCTTTTTCCCCTCTTACCTTCTCTACTTCTC
CTATTTTTTTCACACCCACCCCTACTTTCTTTCCCG
TCCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCATTAGGTCTTACATCTATGGAAGCTG
AAGTCTGAATGTTAAGATACACACCCATCCGATGTTTTGTTTTGTTTTGT
TTTGTTTTGCTGGGATAGGGTCTCAAGTAGTCCAAGCTAACCTTAAACTC
CCTATATAATCTTGATCTTCCTGCCACCATCTCAGAAGTGCTAGGATTAT
AGACATACAAAGGATACCATGTGTCTTAGATAGGGTTTCTATGCCTCTGA
TAAAATCTCATGGCCAAAAGCAATTTGTCAAGCAAAGGGCTTATTTGTCT
TACATTTCCAGCTAACATCTCCTTACTGAATGAAGCCATGACATGTAACT
CATACAGGTCATGATACTCTACTCAATTATCTGATGCATGAGCCACTGGA
GGAATGCTGCTTACGTTTTCTCCCCTGTATTCTCTTCGCTTGCCTGTTCT
ATACATCCCAGGCACACCTGCTATTCTCTCTGCCCTAGGCTCATTCTGAT
CTCTCTCCATCTCTTAATCGTAATCATACCCACTGCTCCTGTCTTATGCC
AAATTCCTGTGTCATGCTTCTCTCTCGACTACTACTCTCCTCTTTCTCTA
CTACTTGCTACTCTGCTCCTCATCGACCTACTTTCTTCCGTCTTCGTCTT
GCTACTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_b06.b1 MSMg01no057_b06.b1 CHROMAT_FILE:
MSMg01no057_b06.b1 PHD_FILE: MSMg01no057_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:54 2005
         (327 letters)



>mm_chr3_58197926_58198649
          Length = 724

 Score =  574 bits (297), Expect = e-168
 Identities = 314/321 (97%), Gaps = 3/321 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctctatttacatatcctacttttgattacaacaagaaaataataggaaataaaat 66
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattctctatttacatatactacttttgattacaacaagaaaataataggaaataaaat 465

                                                                       
Query: 67  tatttggataaataaaagtgtaattacaggatgacaccagactgtccagatgtaggaaga 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tatttggataaataaaagtgtaattacaggatgacaccagactgtccagatgtaggaaga 405

                                                                       
Query: 127 ttttcacagggtgataccaactgcttgtattgtgaagtcaagactttgatttgactggaa 186
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttttcacagggtgataccaactgtttgtattgtgaagtcaagactttgatttgactggaa 345

                                                                       
Query: 187 attgatggttgctggatgggagagggtcggatttcttcggggatgcaggctgggagtggc 246
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 attgatggctgctggatgggagagggtcggatttcttcggggatgcaggctgggagtggc 285

                                                                       
Query: 247 tacccatggttctgtagatgtcccttcactaatggtcacaataggtagtgatgatttaca 306
           ||||||||||||||||||||||||||||||||   |||||| ||||||||||||||||||
Sbjct: 284 tacccatggttctgtagatgtcccttcactaa---tcacaacaggtagtgatgatttaca 228

                                
Query: 307 tggattctggatgttgcaggc 327
           |||||||||||||||||||||
Sbjct: 227 tggattctggatgttgcaggc 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 724
Length adjustment: 9
Effective length of query: 318
Effective length of database: 715
Effective search space:   227370
Effective search space used:   227370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)