TGCGGCGCTATACGACTCCTATAGTTCGAGGATCCGCGGAATTCTCTGGC
TACACTCGCACCATTTTTTTTTAAAGTTGGATTATTTGTTTTCTTGATGT
CCACTATTTTTAGCACTTCATATATTTTGTGTATTAACCCTTTATTATAT
GTGGAGTTGGAGACAAAAGTTTACCCTTTCTGTAGGCTGTTACTTTGTCT
AAATGATAATGAGTTTGTTGATTGTTTGATTGACTTTTGCCATACAGAAA
TATTTCAGTTTCATGAGGTCCCGCCTTTCAATCCATTTTACAGATATGTG
TTTATACATACAAAATAATGTTTCCCCTTGTGCATTATGTGTAACCTCAA
ACAAATTATAGTTACAAATTTAGGCAAAACCACAAAAATTTCTTATTTTT
CATTTATATTTCCCGATTAATACTTTACACCAATATGAGCATATGACCTT
TAAAACTGTACCAATGTAATTTACACTGTATATTTGCCTGCACTCTTTTG
TAACTTTTCTTCAGCATCTAATACAAGTTATATGGAAAATATAATATGTG
ATTATCATTAATCTTTTATAATAAATGTAGATATTTTATTTTATTTTTAG
TGAAAATTTACTTCATAAAATAGCTGCAATTTTGCTTTTATTGTATATGC
AAATACTATGAGAAAATACATTTATTTCATATGAAGCAATCATTATAAAT
AAAAT

CGATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCCTTTTGGCTATCTTCTGTTAGGT
TTGTTGATGGAGTACTTTCTTGCTTTTCCTAGGGAGTAGTTTTATTCCTT
GTATAGGAGTTTTTCCTTTTTTATCCTTTGAAGGGCTAGATTTGTGGAAA
GATATTGTATGAATTTGGTTTTGTCATGGAATACATTGGTTTCTCCATCT
ATGGTAATTGAGGCTTTTGCTGGGTATAGTAGCCTGGGCTGGCATTTGTG
TACTCTTAGGGTCTGTATAACATCTGTTCATAGTCTCTGGTGAGAAGTCT
GTTGTAATTTTAATAGGTCTGCTTTTATACATTACTTGACCTTTTTCCCT
TATTGCTTTTAATATTTTCCCCCTGTTTAGTGCATTTGGTGTTTTGATTA
CTATGTGTCAGGAGTAATTTCTTCTGGTCCAGTCTATTGGAATTCTTTCA
GGCTTCTTGCTTGTTCATGGGTATCTCTTTATTTAGGCTAGGGAAGGTTT
CTTCTATAATCTTGTTGAAGATATTTGCTGGCCCTTCAAGTTGAAAATCT
TCATTCTCATCTGTATCTACTATGGCTTGGTCTTCTCACTGTGGTCTGGA
TCTAGTGCATGTTTTGAGCTTGGATACCCTCGCTCTCTCCTCTATCGTCG
TGCTCTTGTCTT

Query= MSMg01no057_b18.b1 MSMg01no057_b18.b1 CHROMAT_FILE:
MSMg01no057_b18.b1 PHD_FILE: MSMg01no057_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:56 2005
         (610 letters)



>mm_chr3_13450279_13451288
          Length = 1010

 Score = 1120 bits (579), Expect = 0.0
 Identities = 600/607 (98%), Gaps = 2/607 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctggctac-actcgcaccatttttttttaaagttggattatttgttttcttga 63
           ||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattctctggctacaact-gcaccattttttttttaagttggattatttgttttcttga 263

                                                                       
Query: 64  tgtccactatttttagcacttcatatattttgtgtattaaccctttattatatgtggagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtccactatttttagcacttcatatattttgtgtattaaccctttattatatgtggagt 323

                                                                       
Query: 124 tggagacaaaagtttaccctttctgtaggctgttactttgtctaaatgataatgagtttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggagacaaaagtttaccctttctgtaggctgttactttgtctaaatgataatgagtttg 383

                                                                       
Query: 184 ttgattgtttgattgacttttgccatacagaaatatttcagtttcatgaggtcccgcctt 243
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 384 ttgattgtttgattgacttttgccatacagaaacatttcagtttcatgaggtcccgcctt 443

                                                                       
Query: 244 tcaatccattttacagatatgtgtttatacatacaaaataatgtttccccttgtgcatta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaatccattttacagatatgtgtttatacatacaaaataatgtttccccttgtgcatta 503

                                                                       
Query: 304 tgtgtaacctcaaacaaattatagttacaaatttaggcaaaaccacaaaaatttcttatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtgtaacctcaaacaaattatagttacaaatttaggcaaaaccacaaaaatttcttatt 563

                                                                       
Query: 364 tttcatttatatttcccgattaatactttacaccaatatgagcatatgacctttaaaact 423
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttcatttatatttcatgattaatactttacaccaatatgagcatatgacctttaaaact 623

                                                                       
Query: 424 gtaccaatgtaatttacactgtatatttgcctgcactcttttgtaacttttcttcagcat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtaccaatgtaatttacactgtatatttgcctgcactcttttgtaacttttcttcagcat 683

                                                                       
Query: 484 ctaatacaagttatatggaaaatataatatgtgattatcattaatcttttataataaatg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctaatacaagttatatggaaaatataatatgtgattatcattaatcttttataataaatg 743

                                                                       
Query: 544 tagatattttattttatttttagtgaaaatttacttcataaaatagctgcaattttgctt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 744 tagatattttattttatttttagtgaaaatttacttcataaaatagctgcaattttgttt 803

                  
Query: 604 ttattgt 610
           |||||||
Sbjct: 804 ttattgt 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)