XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCAATCA
ATGACCAGAGTTATATGGTTTTCTCTTGACAAGAATTTATAGGGCAGGCT
TTTTAAACTTATGGGGCAAGCTGAGACAGCAAAGATTGGAAAGGGAATTA
GAGGGACAAAATGATACTGCATTTTCAACTGGAAGAAAAGAAGCATGCCC
TGGCCAGTTTACAGAGAAGGAGGAGAGTACTGTTAGAATGATGCTCAGAA
AGTGACTGGCTATGATTATTCTCTAGGTCCCTGGTAAACCCTTTGGTAAA
TAGACCTGCTGTCACTGGGCTCAACAGTTTGAAGAAGAGATGTGATTGAG
GAGAGCTTTGGATATTGCACACCTCAGAAAGTAATCGCTGGAACTTCATA
TCTGCTTTCCAAAAATTACACCCAATCAGCTGAAGCAAGTGTAATCTGCT
CCTGTACAGAGAAAGTATGAAAAGCAGGGTTCTGGCTAACTCACATCAGC
AGAACACAATATGATCACACTCCTAGACCCTAAAAATTAAGTTACATAAA
AATGCCTATAGAGTGGAAGATGATCAGACTGAATGCACATATTTTGAAAG
ATATGGAAAAGAAGAATACTGTGTGCGCAGCAGCTTAGAAGCATAGCATT
TGACCTCAACTGAAGAACATGAGGTTTCAAAAACCTTGCATTTAACAAAG
GCAAGGCTTCTTATTG

TGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXNGAATTTATCCCAGCGGAATTCTTCCCTGACAAATGGAGATTCCTC
CAGATANTTTAAAAGTTACACCTCATAACCACATTTAGCAACGGCCCTAG
GAAATCAGGCTAGGCCGGGCGGCGGAGGTGTTCGTGCTATTCGCATCCAC
CCCTCCCTCCCCTCCCCCTCTTTTCTCTCTCTCCTTGTTGCTTCCCTCTC
CCTCTCCCCTTCTCCTCCCCCCCACTTCCTCTCCCTCCTCTTCCACCCTT
CCTTTTTCTCTCTCTTCCTACTTCCTCGTCTCTCTTTCTCCCTCCCTTTT
CCTCTCCTTTCCCTCTTCTCTTTCTCTTTTTTCTCTTCCATCCCTATCCC
CATACCCCTTCCCCTACTCTCTTTCTCTTCCTCCCTACTCCCCCCTCCAT
TCCCACCCCTCCCTTCTCACCTCTTTTTTATATTTCCATCTCTCCCCCCC
CTCACCAACTCCTCTCACTCCTATCTCCCTTTTTCTNTTCCCTTCTCTCC
CACTCTCATATTTTCTCCTCCCCCCCTTCCCCTTCCCTTTCTTTCCTTTT
ATCCACCTCCTCTTAATCTTCTACCCCACTCACCCCTCCCCTCTCCCTTT
CTTTTCTTTCCCTCCACCTCTTTCTACCCACTCTTCCCCTCTACTTACTC
CTCCACCTCCTTTTTCCCACCATCTTCTTCTCCTCTCTCTCTCCCCCACT
CCCCTCCCTTCCTCCACCCCTCTTCTCCTTCGTCCTCCACCCTCTTCTCA
TTCCTCCTTCTCTCTCTTTTCTCCTTTCTTCCTCTCCTTTCCCTCCCTTT
CTTTTCCTATTTCCCCTCTCCCTGTCTTCCGCCTAGCATATCCTCCATCC
CTCTACTCATATCTCATCCTCCATCCTTTCG

Query= MSMg01no057_d19.b1 MSMg01no057_d19.b1 CHROMAT_FILE:
MSMg01no057_d19.b1 PHD_FILE: MSMg01no057_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:07 2005
         (547 letters)



>mm_chr3_76652277_76653224
          Length = 948

 Score =  998 bits (516), Expect = 0.0
 Identities = 540/548 (98%), Gaps = 1/548 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagttatatggttttctcttgacaaga-atttatagggcaggctttttaaacttatgggg 59
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 748 gagttatatggttttctcttgacaagagatttatagggcaggctttttaaacttatgggg 689

                                                                       
Query: 60  caagctgagacagcaaagattggaaagggaattagagggacaaaatgatactgcattttc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 caagctgagacagcaaagattggaaagggaattagagggacaaaatgatactgcattttc 629

                                                                       
Query: 120 aactggaagaaaagaagcatgccctggccagtttacagagaaggaggagagtactgttag 179
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 628 aactggaagaaaagaagcatgcccaggccagtttacagagaaggaggagagtactgttag 569

                                                                       
Query: 180 aatgatgctcagaaagtgactggctatgattattctctaggtccctggtaaaccctttgg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aatgatgctcagaaagtgactggctatgattattctctaggtccctggtaaaccctttgg 509

                                                                       
Query: 240 taaatagacctgctgtcactgggctcaacagtttgaagaagagatgtgattgaggagagc 299
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 taaatagatctgctgtcactgggctcaacagtttgaagaagagatgtgattgaggagagc 449

                                                                       
Query: 300 tttggatattgcacacctcagaaagtaatcgctggaacttcatatctgctttccaaaaat 359
           |||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 448 tttggatattgcgcacctcagaaagtaatcgctggaacttcacatctgttttccaaaaat 389

                                                                       
Query: 360 tacacccaatcagctgaagcaagtgtaatctgctcctgtacagagaaagtatgaaaagca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tacacccaatcagctgaagcaagtgtaatctgctcctgtacagagaaagtatgaaaagca 329

                                                                       
Query: 420 gggttctggctaactcacatcagcagaacacaatatgatcacactcctagaccctaaaaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gggttctggctaactcacatcagcagaacacaatatgatcacactcctagaccctaaaaa 269

                                                                       
Query: 480 ttaagttacataaaaatgcctatagagtggaagatgatcagactgaatgcacatattttg 539
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 268 ttaagttacataaaaatgcctatagagtggaagatgatcagagagaatgcacatattttg 209

                   
Query: 540 aaagatat 547
           ||||||||
Sbjct: 208 aaagatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 948
Length adjustment: 10
Effective length of query: 537
Effective length of database: 938
Effective search space:   503706
Effective search space used:   503706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)