BAC Information

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BAC

Clone NameMSMg01-057F15
Chromosome3 (Build37)
Map Location 18,317,607 - 18,318,136
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
Downstream geneLOC622921, LOC100040153, Armc1, Mtfr1, Pde7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057F15.T7 (MSMg01no057_f15.b1)MSMg01-057F15.TJ (MSMg01no057_f15.g1)
ACCAG284528AG284529
length785711
length of high quality
(start - end)
71 (69 - 139)531 (71 - 601)
definitionCHROMAT_FILE: MSMg01no057_f15.b1 PHD_FILE: MSMg01no057_f15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:16 2005CHROMAT_FILE: MSMg01no057_f15.g1 PHD_FILE: MSMg01no057_f15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTAAACGAATCACTTTCGGTACCGTGCGCGGAATTCAGC
AATTTCTGTATCTCCTCCACCTTGATTCCCTCTATTCTGTTGTTGTGTCT
AACTGCAGAGGCCTTATTGTTGGTGTTGTTGTTGTTGTTGGTGGCGTTTA
CATCTCTACCATTGCACCACTCTGTTTCCTTTACATCTTTCCAACCCCCA
TCCCTCAATAAAATACAACAAACATTGCCCAAATACAAATTTTTTTCCAT
CCCACCGACTCACTCAATATTCTACTACCCACAATCCATCTTCACCGAAA
CACGGAGCTTCCCCTCCCCTTACACACACAAAACACAACGAACATACTCC
TTTTTTTTTCTCCCCTCCCCATTCCTCCCGGTACAGATCAATACATTTTC
CCATTTATCAGCCCCCCCCCCCGGGGGTATTCATGTACTCTACCTCACAA
TTAACACTTAATTCATGCCGGATCCCCCCACCTTCATACATAATCGCTGT
TCCAATTTATACATATTCACGAATAGTCCCCCCACCCTTCAACCACATAA
TACTAAGCGCGCATAACAACTATTTTCAACAGACAAAAATAATGTGATAC
TATTGCTAAAAACACAAATTGACCACTCCGTTCCTACATCACCTATTAAG
TTTTACTGTTGTTATTCAACATAATTATACAAACAGCGCCCTCGACAACC
CGATTACTTTTTTATCTTTTTCTAAAGCGAGCCCCCCCCGTCATTTTCCC
TATGAGAAAGGCTCGACACCTGTATCCTCCTGCTC
TAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTCACACTAGAGCCCTCTCTGGAGTGCTG
GAGAGATAGCATGTTAGAGACCTCCAACATCTTCATGAATCTGAAAAAAT
CACCTGGTTTGCTCGTAGAAGGAGAGAAGTCAGTGGAAAGCCAAAGGACA
GTAGTGGTCAACAGCAGAGTCAGACCAGATGAAATCCTGAGATACCAAAC
TTTCGATTTGTAAAGAATGAACAAAACCATAAAGTGCTCAGCAATGTAAA
ACAAAAAGGAGGCGGTTCCTCATTTGGAGTTTCCTGGAAAAAAAGAAAAA
CATGAGAAGGATTCCCAAGCCTGCTGGTAGACACTTAGCAAAACCAAAGA
TTTGACCAGACACTTCGTCCAGTGTAGCAAGGAGACACCAGAGAAGAGAC
CCATTATGCTGCTACAATCAAGTAATGGGTTCAGCAAACAAAACACCTAG
GGAAAAAAAATACAACTGAGATTCTCAGGTTGGAAGGCCAGAGACTGTAC
TTTTTATCTCTAAATCCAAAGTTCTCATGCCTCTGTGGAATAAGCCATTA
GGAACAGGCAAGGGTGCAGTTTCATGTCAGCATATATTTTAGGAACAAGT
ATAACTGGACACTGCAGATTAAATTAGTAGAACTACCTTTTTCACAGCTT
CCAGACCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_f15.g1 MSMg01no057_f15.g1 CHROMAT_FILE:
MSMg01no057_f15.g1 PHD_FILE: MSMg01no057_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:16 2005
         (531 letters)



>mm_chr3_18317407_18318336
          Length = 930

 Score =  975 bits (504), Expect = 0.0
 Identities = 525/532 (98%), Gaps = 3/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcacactagagccctctctggagtgctggagagatagcatgttagagacctccaacat 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcacactagagccctccctggagtgctggagagatagcatgttagagacctccaacat 260

                                                                       
Query: 61  cttcatgaatctgaaa-aaatcacctggtttgctcgtagaaggagagaagtcagtggaaa 119
           |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 cttcatgaatctgaaacaaatcacctggtttgctcgtagaaagagagaagtcagtggaaa 320

                                                                       
Query: 120 gccaaaggacagtagtggtcaacagcagagtcagaccagatgaaatcctgagataccaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccaaaggacagtagtggtcaacagcagagtcagaccagatgaaatcctgagataccaaa 380

                                                                       
Query: 180 ctttcgatttgtaaagaatgaacaaaaccataaagtgctcagcaatgtaaaacaaaaagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcgatttgtaaagaatgaacaaaaccataaagtgctcagcaatgtaaaacaaaaagg 440

                                                                       
Query: 240 aggcggttcctcatttggagtttcctggaaaaaaagaaaaacatgagaaggattcccaag 299
           |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 aggcggctcctcatttggagtttcctggaaaaaa-gaaaaacatgagaaggattcccaag 499

                                                                       
Query: 300 cctgctggtagacacttagcaaaaccaaagatttgaccagacacttcgtccagtgtagca 359
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 500 cctgctggtagacacttagcaaaaccaaagatttgaccagagacttcgtccagtgtagca 559

                                                                       
Query: 360 aggagacaccagagaagagacccattatgctgctacaatcaagtaatgggttcagcaaac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggagacaccagagaagagacccattatgctgctacaatcaagtaatgggttcagcaaac 619

                                                                       
Query: 420 aaaacacctagggaaaaaaaatacaactgagattctcaggttggaaggccagagactgta 479
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaaacacctagggaaaaaaa-tacaactgagattctcaggttggaaggccagagactgta 678

                                                               
Query: 480 ctttttatctctaaatccaaagttctcatgcctctgtggaataagccattag 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctttttatctctaaatccaaagttctcatgcctctgtggaataagccattag 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space:   479320
Effective search space used:   479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)