Query= MSMg01no057_i01.b1 MSMg01no057_i01.b1 CHROMAT_FILE:
MSMg01no057_i01.b1 PHD_FILE: MSMg01no057_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:28 2005
(652 letters)
>mm_chr3_158665065_158666117
Length = 1053
Score = 1195 bits (618), Expect = 0.0
Identities = 642/650 (98%), Gaps = 3/650 (0%)
Strand = Plus / Plus
Query: 5 gaattcactgtccacttctctcaacttgaattagcttagctcctttctaaagttttccct 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtccactt-tctcaacttgaattagcttagctcctttctaaagttttccct 263
Query: 65 ctgagctgaagactggaaactgtcaggccactaattttgataactggggctctaataacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgagctgaagactggaaactgtcaggccactaattttgataactggggctctaataacc 323
Query: 125 tgtgtattatattaggaagacacagaacttgtaccaaaatcctagaatcttaaaaaaaa- 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtgtattatattaggaagacacagaacttgtaccaaaatcctagaatcttaaaaaaaaa 383
Query: 184 ttctcaaaacacatctgcctacttttcagtattgtttcacatccctttggtgtttaaggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttctcaaaacacatctgcctacttttcagtattgtttcacatccctttggtgtttaaggt 443
Query: 244 ttgtttgataatacagactatagtacttcatcagagcagactttaatatagaacattact 303
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgtttgacaatacagactatagtacttcatcagagcagactttaatatagaacattact 503
Query: 304 atattttctcctaaaataatctatc-cttgtatagtgtattatagtgttgaagatacatt 362
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 504 atattttctcctaaaataatctatagcttgtatagtgtattatagtgttgaagatacatt 563
Query: 363 gtctttggggggaaattttctcctttatagaaaaataataaaatgtatctacaagaaact 422
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 564 gtctttggggggaaattttctcttttatagaaaaataataaaatgtatttacaagaaact 623
Query: 423 agaagtttaaacctctctgaaggaacagagaaagtcttcaccagtaaaaaaaatgaggaa 482
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 agaagtttaaacctctctgaaggaacagagaaagtcttcaccagtaaaaagaatgaggaa 683
Query: 483 tagaacaaaaccaatgggagactaaaacctggatctgctactaaagaggctgagccagag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tagaacaaaaccaatgggagactaaaacctggatctgctactaaagaggctgagccagag 743
Query: 543 atgcaaggaagatgaacaggaagattgccaaacaagtgaacacaaccaaattgtatttgg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atgcaaggaagatgaacaggaagattgccaaacaagtgaacacaaccaaattgtatttgg 803
Query: 603 atattgcccatgtctagtaagcgttgcctgatggctacaggaagcactaa 652
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atattgcccatgtctagtaagcgttgcctgatggctacaggaagcactaa 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1053
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1043
Effective search space: 669606
Effective search space used: 669606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_i01.g1 MSMg01no057_i01.g1 CHROMAT_FILE:
MSMg01no057_i01.g1 PHD_FILE: MSMg01no057_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:28 2005
(622 letters)
>mm_chr3_158738734_158739761
Length = 1028
Score = 1145 bits (592), Expect = 0.0
Identities = 615/626 (98%), Gaps = 8/626 (1%)
Strand = Plus / Minus
Query: 1 ttccttcccttgtgtcaagggaattgaggacagaacacccagtagcatggcacagaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 825 ttccttcccttgtgtcaagggaattgaggacagaacacccagtagcatggcacag-aaaa 767
Query: 61 aaaatccaaaaaagcaatcagaagcataaaagtggccctgtacataggccctatcaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 aaaatccaaaaaagcaatcagaagcataaaagtggccctgtacataggccctatcaaaca 707
Query: 121 tctcagaagctgtgcctattgaaggcttcggggtgctcttctgccctccatggttggcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tctcagaagctgtgcctattgaaggcttcggggtgctcttctgccctccatggttggcct 647
Query: 181 ctggtgactttacctcagctggctatcacaactgaataaaggttgcaatagagagttctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctggtgactttacctcagctggctatcacaactgaataaaggttgcaatagagagttctt 587
Query: 241 tttggtggactaaaaaggatcttttggtttaaatgtggatttgaaaagccctgaatttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tttggtggactaaaaaggatcttttggtttaaatgtggatttgaaaagccctgaatttat 527
Query: 301 aaccatgaaaaagg----aaaaaaaaaaaactaggactaagaaacttattttagcacatc 356
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aaccatgaaaaaggaaaaaaaaaaaaaaaactaggactaagaaacttattttagcacatc 467
Query: 357 ataaatgcagtagtttttaacccacagacatttccagaaatggtattggctaaccatttt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ataaatgcagtagtttttaacccacagacatttccagaaatggtattggctaaccatttt 407
Query: 417 caaaaaccgatctaggagcccgagactattcctgaaacaatttaagagactctacagtct 476
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 caaaaaccgatctaggaacccgagactattcctgaaacaatttaagagactctacagtct 347
Query: 477 attcatttgcataacaacacaggggcttgtttacttttatattttcttttacagcaatat 536
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 attcatctgcataacaacacaggggcttgtttacttttatattttcttttacagcaatat 287
Query: 537 ttttcacaggcaacttgaagtatgatgcttaatggggtacatacttacaaattctagaat 596
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 286 ttttcacaggcaacttgaagtatgatgcttaatggggtgcatacttacaaattctagaat 227
Query: 597 tgtctatggt---aggtttatattat 619
|||||||||| |||||||||||||
Sbjct: 226 tgtctatggtagaaggtttatattat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1028
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1018
Effective search space: 623016
Effective search space used: 623016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
