NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGCATCAGCCCGCAAAGAAAAGTCTGTTCCTTAGTGGTCCT
GGAAAAATGTCACTTGCCTAAGGAAGAATAGATTTGCCATTTCATATAAG
CTTGTCACATTCAAATGTAGACAGGAGTATTGTAGTGACAGTTATTGAAA
AATACAGAACCTGCGACATTTGCAGGGGTTGCCAGCATATGGGTTACCTG
AATGCATTATCTGTGGGAAGACACTTGTTCCACACTGTGATATCCAGTCA
ATCAAATTTCTATGCATTTAGGTCATAATTTTCTATTTTCATTCCAGCTC
CACATCTGAAACACTGTTAGCAAACATCTCAGAACCACATAACATGTATT
GCAGAAAAATAACTTTTTCTATTGCATAAAGCTAAAGAATTTGAGACATC
ATGAAGCATGGGGTCATGTGGTATTTTTGATGAAATGTTTTGAAAGTAGT
ATCGGCCATTATATAGTTACATAGTAAGATTTGAATATTTCTTTTTAAGA
ACTGTGGTTACTTGTTACTTAGTGCATCCCTGCTTACTTATTAATCCAGT
ATTTTAGGCATTCAGTCTTTAAACAAATTAAAACTCAAAAGAGAAGTAAT
AGCAAATTAATACATAAAAGGGAGACACTACCATCAATGTCTCANATCAC
C

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAAGAATACCGAATGGCTGAG
AAGCACCTGAAAAAATGTGCAGCATCCTTAATCATCAGGAAATGGAAATC
AAAACAACCCTGAGATTCCATCTCACACCAGTCAGAGTGGCTAAGATAAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGAAACAC
TCCTCCACTGCTGGTGGGCTTGCAAGCTTGTAGAAGCTGGAAATAACCCA
GATGCCTCTCAACAGAGGAATGGATAAAAAAAAAATTGTGATACATTTAC
ACAATCGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT
AGGCAAATGGTTGGACATACACGGCATTATCCTGAGTGAGGTAACCCAAT
CACAAAAGAACTCAAATGATATGTACACACTGATAAGTGGATATTAGCCC
AGAAACTTAGAATACCCAAGATATAAGTTACAATTTGCAAAACACATGAA
ACTCAAGAAGAAAGAAGACCAAAGTGTGGACACTTTGTCCCTTTTTAGAA
TTGGGAACAATCACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTG
AGACAAAAGGATGGATCATCTAGAGACTGCCATATCCAGGGATCCATC

Query= MSMg01no057_o05.b1 MSMg01no057_o05.b1 CHROMAT_FILE:
MSMg01no057_o05.b1 PHD_FILE: MSMg01no057_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:59 2005
         (647 letters)



>mm_chr3_124132992_124134038
          Length = 1047

 Score = 1218 bits (630), Expect = 0.0
 Identities = 639/642 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagcatcagcccgcaaagaaaagtctgttccttagtggtcctggaaaaatgtca 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagcatcagccagcaaagaaaagtctgttccttagtggtcctggaaaaatgtca 264

                                                                       
Query: 65  cttgcctaaggaagaatagatttgccatttcatataagcttgtcacattcaaatgtagac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgcctaaggaagaatagatttgccatttcatataagcttgtcacattcaaatgtagac 324

                                                                       
Query: 125 aggagtattgtagtgacagttattgaaaaatacagaacctgcgacatttgcaggggttgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggagtattgtagtgacagttattgaaaaatacagaacctgcgacatttgcaggggttgc 384

                                                                       
Query: 185 cagcatatgggttacctgaatgcattatctgtgggaagacacttgttccacactgtgata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagcatatgggttacctgaatgcattatctgtgggaagacacttgttccacactgtgata 444

                                                                       
Query: 245 tccagtcaatcaaatttctatgcatttaggtcataattttctattttcattccagctcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccagtcaatcaaatttctatgcatttaggtcataattttctattttcattccagctcca 504

                                                                       
Query: 305 catctgaaacactgttagcaaacatctcagaaccacataacatgtattgcagaaaaataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catctgaaacactgttagcaaacatctcagaaccacataacatgtattgcagaaaaataa 564

                                                                       
Query: 365 ctttttctattgcataaagctaaagaatttgagacatcatgaagcatggggtcatgtggt 424
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctttttctattgtataaagctaaagaatttgagacatcatgaagcatggggtcatgtggt 624

                                                                       
Query: 425 atttttgatgaaatgttttgaaagtagtatcggccattatatagttacatagtaagattt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttttgatgaaatgttttgaaagtagtatcggccattatatagttacatagtaagattt 684

                                                                       
Query: 485 gaatatttctttttaagaactgtggttacttgttacttagtgcatccctgcttacttatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaatatttctttttaagaactgtggttacttgttacttagtgcatccctgcttacttatt 744

                                                                       
Query: 545 aatccagtattttaggcattcagtctttaaacaaattaaaactcaaaagagaagtaatag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aatccagtattttaggcattcagtctttaaacaaattaaaactcaaaagagaagtaatag 804

                                                     
Query: 605 caaattaatacataaaagggagacactaccatcaatgtctca 646
           ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 805 caaattaatacataaaagggagacactaccagcaatgtctca 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)