BAC Information

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BAC

Clone NameMSMg01-058C09
Chromosome3 (Build37)
Map Location 95,357,696 - 95,358,011
singlet/doubletsinglet
Overlap geneCtss
Upstream geneSnx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, LOC100043312
Downstream geneHormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058C09.T7 (MSMg01no058_c09.b1)MSMg01-058C09.TJ (MSMg01no058_c09.g1)
ACCAG285132AG285133
length706712
length of high quality
(start - end)
332 (69 - 400)215 (76 - 290)
definitionCHROMAT_FILE: MSMg01no058_c09.b1 PHD_FILE: MSMg01no058_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:20 2005CHROMAT_FILE: MSMg01no058_c09.g1 PHD_FILE: MSMg01no058_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGTGGTCGCAATACGACTCCTATTTCAACAAGAGGCGCGGAATTCTAA
TCTCTTCCTCTCGAAAATGTGACTTTATTTGGAAGTAGGGGCACTGTAGA
TGCCATTAATTAGTACATGTCATTAATTAGATTAAGATGAAGTCATTAGG
TCAGCCTTAATCCAGTAGTACTGAAGTCAGCACACACGAGGCCTTGCGAG
GTTTGAGGGCAAGAGAGAGGCCTGTTTCTACAAGTCAAAGAATGGAAATC
ACACGGCTGCAAGCCTCAAAATCTGGGGTGGTGCTTAACTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTC
CCCCCTTCCCTCCCCACTCTTTCTCTCTCTCTCTTTCTTTCTTTTCATTG
TGTGTGTTTGTGCGTGCGTGTGTGTGACACGTGTCCCAGGTTCAATGTGA
CCTTGTATTTGCTATGTACCAAAGGTTGGTCTTGAATTTCTGACCTTCCT
GCCTCCATTGTCCAATTCCAGGATTATTGCCCCATACTGGTCTCTTTTTT
ATCATTCATCAATCTATCATAATCATCCCTTATTTACTTATCCATCCATT
TTCAACCGCGTGAGTACCCCGCAGCTTGTTTTTTTACTCCTCTTTATGAT
TTTTTCTTACCCCCCTCTCCATGTTTGCTCCTTCCCCCCACCCTTTTTGT
CATATT
CCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACACAAGGGG
TGAACTATAGAAGGTTCCCCGAAATTCCTGATAAGGAGACTTGGTGAAGA
CAGTCTCTTTCCAGAGGTCGGGGGTCAGGTAGCTGTAAGTCTTGGAGATG
GCATCAAAGGTGGCCTTAGCAAAATTGCCCAGGGTGGCAGTGCAGCCTCT
GGCTGAAGTGTAGCAGTCATCTATACCAGCCATCATCAGGAGCTTCTTGG
GCACAGGAGCAGAGACAATTCCAGTGTCTCTGGGGGCAGGGATGAGTCGC
ACCAGCACAGAGCCACAGCGGCCTGTCACCTTGCATGGAACAGTGCGGGG
CTTGCCAATCTTGTTCCCCCAGTAGCCTCTCCACACAGGGACGATGGAAA
GTTTGGCCAAGATGATGGCCCCTCCGATGGTAGTGGCAACCTCCTTGGAG
CACTTAACACCAAGACCAACGCGACCATTTTAGTTCCCAATAGCGACGAA
AGCCTTGAACCTGGTCCGCTGGTCAGCCCGAGTCTGCTTCTGCACTGGCA
TGATTTTCAGAACCTAATCCTTTAGGGACGCACCCAGGAAGAAGTCCATG
ATCTCAAACTTCTTAATAGGCAGGGAGAATAGGTAGATCCTCCTTTAAGG
ACTTGATCTTTATGTCCTTAACCAGGTGGTCCAGCTTGGTGACTAGGACT
CACTCCTAGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_c09.b1 MSMg01no058_c09.b1 CHROMAT_FILE:
MSMg01no058_c09.b1 PHD_FILE: MSMg01no058_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:20 2005
         (332 letters)



>mm_chr3_95357484_95358215
          Length = 732

 Score =  553 bits (286), Expect = e-162
 Identities = 311/322 (96%), Gaps = 6/322 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgactttatttggaagtaggggcactgtagatgccattaattagtacatgtcattaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 528 gtgactttatttggaagtaggggcactgtagatgccattaattagtagatgtcattaatt 469

                                                                       
Query: 61  agattaagatgaagtcattaggtcagccttaatccagtagtactgaagtcagcacacacg 120
           |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 468 agattaagatgaagtcattaggtcagccttaatccagtaggactgaagtctgcacacacg 409

                                                                       
Query: 121 aggccttgcgaggtttgagggcaagagagaggcctgtttctacaagtcaaagaatggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aggccttgcgaggtttgagggcaagagagaggcctgtttctacaagtcaaagaatggaaa 349

                                                                       
Query: 181 tcacacggctgcaagcctcaaaatctggggtggtgcttaactccttccttccttccttcc 240
           |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 348 tcacacggctgcaagcctcaaaatctggggaggtgctcaactccttccttccttccttcc 289

                                                                       
Query: 241 ttccttccttccttccttccttccttccttccttccttcctccccccttccctccccact 300
           |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 288 ttccttccttccttccttccttccttccttccttcct----ccccccttccctccccact 233

                                 
Query: 301 ctttctctctctctctttcttt 322
           ||  ||||||||||||||||||
Sbjct: 232 ct--ctctctctctctttcttt 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)