BAC Information

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BAC

Clone NameMSMg01-058C14
Chromosome3 (Build37)
Map Location 75,671,066 - 75,671,539
singlet/doubletsinglet
Overlap genenone
Upstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1
Downstream geneGolph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058C14.T7 (MSMg01no058_c14.b1)MSMg01-058C14.TJ (MSMg01no058_c14.g1)
ACCAG285142AG285143
length698701
length of high quality
(start - end)
568 (74 - 641)476 (71 - 546)
definitionCHROMAT_FILE: MSMg01no058_c14.b1 PHD_FILE: MSMg01no058_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:21 2005CHROMAT_FILE: MSMg01no058_c14.g1 PHD_FILE: MSMg01no058_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAAGAGGATCC
GCGGAATTCCTGATTCCTCCAGAACTTTTATCATGAATGGGTGTTGGATC
TTGTCAAATGCTTTTTCTGCATCCAACGAGATGATCATGTGGTTTTTGTC
TTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTTGTATATTAA
ACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCGGGATGGATGATT
GCTTTAATGTGATCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTT
TGCATCGATATTCATAATAGTTATTGGTCTGAAGTTCTCTATCTTTGTTG
GATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAG
TTGGGTAGAGTACTTTCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAAC
TGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCGT
CTGGTCCTGGGCTTTTTTTGGCTGCGAGACTATTTATAACTGCTTCTATT
TCTTTAGGGGATATGGGACTGTTTAGAAGGCCAACTTGATCCTGATTCAA
CTTTGGTACCTGGTATCTGCCCAGAAATTTGTCCATTTCGTCCAGGTTTT
CCAGTTTTGTTGAGTATAGCCTTTTGTAAAATGATCTGATGTTGTTTT
TCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCACAAAGAATTCCTGTCCTCCTTTTTAGTAGCCTCTTAG
TTTTCACTTTCTTCATTCCTGTTAAAAAACCTCACAGACAGACTCACCCA
ACAGAAGGGAAACCAATAATTTTTCTCCCTTCAGCTCCATGTCTATAAAT
GCCCTCAGTTTTTGATAATAAATCCACTGAATTTTTTAAAAAATGCCTGT
ACATCTGTACACAAAGCAGATTATACATGTGAAAATTAATCCTTCAGGCA
CTCCCCTTGGCATATTCTTAGCCCTTCAGGTGACATGTGATGAGAACTTT
CAAGCAAACCTGGTTATAGCCCACTTCTGCCCACCCTACCTTTCATTCTC
CCAGATTGGTTTACTAACCACACAAGATGGTGTGCATACACAATGAGAGG
AATGGCCCTTGGTCCTAGGAAGGCTCGATTCTCCAGTGTAGGGGAATGCC
AGAACAGTGAAGCAGGAGTGGGTGGGTTAGTGAGCAGAAAGAGGGGAGGT
GGGGGTGGTTCAGAGGGGAAACTAGGAAAGATGAAAACTTTTGAAATGTA
AATAAAAATTTGTTATTCAAAAAAAAAAAAAAGGGAATAAGAAAATGGGG
TGTTTTGCCTGCCTTTATGCATTGGATCTCTACATCCCGGGTGTTCATGG
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_c14.g1 MSMg01no058_c14.g1 CHROMAT_FILE:
MSMg01no058_c14.g1 PHD_FILE: MSMg01no058_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:21 2005
         (476 letters)



>mm_chr3_75670992_75671865
          Length = 874

 Score =  820 bits (424), Expect = 0.0
 Identities = 463/476 (97%), Gaps = 2/476 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctgtcctcctttttagtagcctcttagttttcactttcttcattcctgttaaaaaac 60
           |||||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 548 ttcctgtcctcccttttagtagcctcttagttttcactttcttctttgctgtt-aaaaac 490

                                                                       
Query: 61  ctcacagacagactcacccaacagaagggaaaccaataatttttctcccttcagctccat 120
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 489 ctcacagacagactcacccaacagaagggaaaccaataattttcctcccttcagcttcat 430

                                                                       
Query: 121 gtctataaatgccctcagtttttgataataaatccactgaattttttaaaaaatgcctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtctataaatgccctcagtttttgataataaatccactgaattttttaaaaaatgcctgt 370

                                                                       
Query: 181 acatctgtacacaaagcagattatacatgtgaaaattaatccttcaggcactccccttgg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 369 acatctgtacacaaagcagattatacatgtgaaaattaatccttcaggcact-cccttgg 311

                                                                       
Query: 241 catattcttagcccttcaggtgacatgtgatgagaactttcaagcaaacctggttatagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 catattcttagcccttcaggtgacatgtgatgagaactttcaagcaaacctggttatagc 251

                                                                       
Query: 301 ccacttctgcccaccctacctttcattctcccagattggtttactaaccacacaagatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ccacttctgcccaccctacctttcattctcccagattggtttactaaccacacaagatgg 191

                                                                       
Query: 361 tgtgcatacacaatgagaggaatggcccttggtcctaggaaggctcgattctccagtgta 420
           ||||||| |||||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct: 190 tgtgcatgcacaatgagaggaatggctcttgctcctatgaaggctcgattctccagtgta 131

                                                                   
Query: 421 ggggaatgccagaacagtgaagcaggagtgggtgggttagtgagcagaaagagggg 476
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 130 ggggaatgccagaacagtgaagcaggagtgggtgggtcagtgagcaggaagagggg 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 874
Length adjustment: 10
Effective length of query: 466
Effective length of database: 864
Effective search space:   402624
Effective search space used:   402624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)