BAC Information

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BAC

Clone NameMSMg01-058F23
Chromosome3 (Build37)
Map Location 72,590,157 - 72,590,451
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058F23.T7 (MSMg01no058_f23.b1)MSMg01-058F23.TJ (MSMg01no058_f23.g1)
ACCAG285303AG285304
length705708
length of high quality
(start - end)
289 (78 - 366)555 (79 - 633)
definitionCHROMAT_FILE: MSMg01no058_f23.b1 PHD_FILE: MSMg01no058_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:36 2005CHROMAT_FILE: MSMg01no058_f23.g1 PHD_FILE: MSMg01no058_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTTGTTTCACAAAGGAATCAGAATTTAACCAAAGATGTCATT
TTAGGTAGAGAAAGGATATATAACCCTAGTGGGAAAGGAAAGAATATGAT
AAAAATATACTATCTCCTGGGCAGAGACACTCTCTCAAAAACATATATAT
ATATATATATGTGAGTGTGTGTGTGTGTTTGTGTGTGTGCACATATATAT
ACACATATGTATACACATATATACATACACATATATACATATATATACTA
TCTGAACATTCAAAACAATATTTATTAATTTAATAAAAAAGTAATTCTTG
CTAATGGAAATTTGTTTAAGACCGGACACAACTTTCTCTCTATATATATT
CATGGTGAGTACTAGGAACGGAATCTAACTGAGCACTTTGGAGACCATGG
AGGATTGTATACCCATATTTTAAATAAACAACACTAGAATACTGCAGAAA
AACATTAAGGACAATAATGTATTCTTTTTAAAATGCTATGCTGAGAGACG
TCATGAGATCACAAATATGTTCTTCAGTTGGAGTATCAAATTAAAACATT
ATGATGTTCTACACTTTGTTACTAAAATTGTGTGTGTATGACACAGGTGC
ATTGCAATTTCCTCCTAGTTCCTTGTAATAAAGTATCAATATAGCGTCTT
GTTTT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAAACAGGGGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGCCTGATAAACAGCTTCA
GTGAAGTAGCTGGATATAAAATTAACTCTAACAAGTCAATGGCCTTTCTC
TACACAAAGGATAAACAGGCTGAGAAAGAAATTAGGGAATTAACACCCTT
CTCAATAGTCACAAATAATATAAAATACCTTGGTGTGACTCTAACTAAGG
AAGTGAAAGATTTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATT
AAAGAAGATCTCAGAAGATGGAAAGTTCTCCCATGCTCGTGGATTGTCAG
GATTAATATCGTAAAAATGGCTATCTGGCCAAAAGCAATCTACAGATTCA
ATACAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTGGAAAGG
GAAATCTCCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAC
TCTTCTCAAGGATAAAAGATCCTCTGGTGGAATCACCATGCCTGACCTAA
AGCTGTACTACAGAGCAATTCTGATAAAAACTGCATGGTACTGGTATAGC
TACAGACAAGTAGACCAATGGAATAAAATTGAAGACCCCAGAAATGAACC
TACACATCTATGGTCACTTGATCTTTAACAAGGGAGCTAAAAACATGCAG
TGGAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_f23.b1 MSMg01no058_f23.b1 CHROMAT_FILE:
MSMg01no058_f23.b1 PHD_FILE: MSMg01no058_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:36 2005
         (289 letters)



>mm_chr3_72590123_72590811
          Length = 689

 Score =  435 bits (225), Expect = e-126
 Identities = 274/301 (91%), Gaps = 20/301 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatttaaccaaagatgtcattttaggtagagaaaggatatataaccctagtgggaaag 60
           ||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||
Sbjct: 329 agaatttaaccaaagatgtcattttaggtagagaaaggatatagaaagttagtgggaaag 270

                                                                       
Query: 61  gaaagaatatgataaaaatatactatctcctgggcagagacactctctcaaaaacatata 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |
Sbjct: 269 gaaagaatatgataaaaatatactatctcctgggcagagacactctctcaaaaac----a 214

                                                                       
Query: 121 tatatatatatatgtgagtgtgtgtgtgtgtttgtgtgtgtgcacatatatatacacata 180
           |||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 213 tatatatatatatgtga--gtgtgtgtgtgtttgtgtgtgtgcatatatatatacacata 156

                                                                       
Query: 181 tgtatacacat------atatacatac--------acatatatacatatatatactatct 226
           |||||||||||      ||||||||||        |||||||||||||||||||||||||
Sbjct: 155 tgtatacacatatatacatatacatacacatatatacatatatacatatatatactatct 96

                                                                       
Query: 227 gaacattcaaaacaatatttattaatttaataaaaaagtaattcttgctaatggaaattt 286
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 95  gaacattcaaaacaatatttaaaaatttaataaaaaagtaattcttgctaatggaaattt 36

            
Query: 287 g 287
           |
Sbjct: 35  g 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)