BAC Information

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BAC

Clone NameMSMg01-058G03
Chromosome3 (Build37)
Map Location 21,757,459 - 21,757,914
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665094, LOC100040325, 7530428D23Rik, LOC100039465
Downstream geneLOC100040353, Tbl1xr1, LOC545506, LOC675593, LOC100040378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058G03.T7 (MSMg01no058_g03.b1)MSMg01-058G03.TJ (MSMg01no058_g03.g1)
ACCAG285311AG285312
length702710
length of high quality
(start - end)
---550 (78 - 627)
definitionCHROMAT_FILE: MSMg01no058_g03.b1 PHD_FILE: MSMg01no058_g03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:37 2005CHROMAT_FILE: MSMg01no058_g03.g1 PHD_FILE: MSMg01no058_g03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTGTGGTCCGGGGGGAGNNTTTTTCGAACCCCGCCGNGGAANNNNNNTT
TTACGNNACCCCGCGNGGANAANANNNGAAAAAAAGGNAGAANCCNNAAN
CATCCCCCCAAAAGAAAAGAAAANAAGGGGAGAAAGAAAGGAAGANAAGG
GAGAAAGGCGAAGAGCAAAAAGNCAGGGGACAGGAGACGCGGGNGAGGAN
GNGGAGAAAGAGGAACACACCCCCCNCGCCGGCGGGTTTTTCAAGCCGAG
CAACCACCCCGGAAAGCAGCCAGGCGGCCCCGCAGAAACACGGACAGACC
ACTTTTTTATTTTCCCGCACCACCACCACCGCGCAGAAACCCAGAAGACC
GCCCCCCCCACACGAGAGACACAGGCGCCACAAAGACCAGAGCAGCCCCA
CGGACAACAGCCACGAAGCAGGAAAGAACCCACAGGCCCCCCAACAGAGG
ACCGGACACCGAAAACGCGGCACCCCGACACAAAGGCCCACGACCCACCA
CCCAAACACACACACACCACGAACCCCCCACGCCAACGGCCGCACCCCGG
AGGGCCCCACCCCGAGGGAGGCCACCCAAGCCGACAACACCCCGAGGGAC
ACCCCCCACACCGCCCCCCGCGACACGAGCCCCCAACCAGACGTATTTTT
TTTTTTTTCCCCCTTCCTTTGTCAACCACTCGACCCCCCCTTATTACCCT
CT
CCCAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCCCCAAACTGGCCTGTAGTC
ATACCTGTGGAACATTTTCTTATTTGCGACTTGATTCAGGAGGGTACCAG
CTCATTGAGGGTGGAGCTATCCCTATGCAGGTGGGTAGGCCTGAGATGTA
CCAAAATGTTTAGCTAGGCAAACCTGGGAAGCAAGCCATTTAAGCAACAT
ACTTCCTTGGTCTCTGCTGTACTTCCTGATTTGGCTTTCCTCAGTGATGT
AGACTGACCTTATAAGCCAAACAATCCTTTCCTCCATCCAGTTGCTTTTG
ATCATGGTGATTATCACAGCAACAGTCACATGTACAGACACACACAGTTG
TTGTGAAGAAGAAACAAAACACTGTGCCTGCCTTCCTTATATGTTGGTAG
AGGGACAGTTGCTTGCCAAGTTTCAGCTTTGTCTGGGCAGATTACTTCTT
ACACTGATCACAAAATAAATACCTGATATTTCCTGTAAATGTTCTATTTT
TAAGTACGATATTAACCTGCCCAAAACATTGTGTTTAGAATCTAAATATT
TGAATCAAAAGCCAAAAAGTTGTACATTGGGTGCCAGTCTTCTTCCATAT
TTTATATGGCCCACTAAATGTTCATGAGGTAATCATAAATATTTAAAATG
GAACACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_g03.g1 MSMg01no058_g03.g1 CHROMAT_FILE:
MSMg01no058_g03.g1 PHD_FILE: MSMg01no058_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:37 2005
         (550 letters)



>mm_chr3_21756961_21757914
          Length = 954

 Score =  812 bits (420), Expect = 0.0
 Identities = 447/460 (97%), Gaps = 8/460 (1%)
 Strand = Plus / Minus

                                                                       
Query: 95  cctatgcaggtgggtaggcctgagatgtaccaaaatgtttagctaggcaaacctgggaag 154
           ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 cctatgcaggtg----ggcctgagatgtaccaaaatgtttagctaggcaaacctgggaag 899

                                                                       
Query: 155 caagccatttaagcaacatacttccttggtctctgctgtacttcctgatttggctttcct 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 caagccatttaagcaacatacttccttggtctctgctgtacttcctgatttggctttcct 839

                                                                       
Query: 215 cagtgatgtagactgaccttataagccaaacaatcctttcctccatccagttgcttttga 274
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 838 cagtgatgtagactgaccttataagccaaacggtcctttcctccatccagttgcttttga 779

                                                                       
Query: 275 tcatggtgattatcacagcaacagtcacatgtacagacacacacagttgttgtgaagaag 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 778 tcatggtgattatcacagcaacagtcacatgtacagacacacacagttgttgtcaagaag 719

                                                                       
Query: 335 aaacaaaacactgtgcctgccttccttatatgttggtagagggacag----ttgcttgcc 390
           |||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||
Sbjct: 718 aaacaaaacactgtgcctgccttccttatacgttggtagagggacagggtcttgcttgcc 659

                                                                       
Query: 391 aagtttcagctttgtctgggcagattacttcttacactgatcacaaaataaatacctgat 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aagtttcagctttgtctgggcagattacttcttacactgatcacaaaataaatacctgat 599

                                                                       
Query: 451 atttcctgtaaatgttctatttttaagtacgatattaacctgcccaaaacattgtgttta 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 598 atttcctgtaaatgttctatttttaagtacgatattaacctgcccaaaacattgtgtttg 539

                                                   
Query: 511 gaatctaaatatttgaatcaaaagccaaaaagttgtacat 550
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaatctaaatatttgaatcaaaagccaaaaagttgtacat 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 954
Length adjustment: 10
Effective length of query: 540
Effective length of database: 944
Effective search space:   509760
Effective search space used:   509760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)