BAC Information

Click to search

BAC

Clone NameMSMg01-058G09
Chromosome3 (Build37)
Map Location 126,442,231 - 126,549,129
singlet/doubletdoublet
Overlap geneCamk2d
Upstream geneUgt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058G09.T7 (MSMg01no058_g09.b1)MSMg01-058G09.TJ (MSMg01no058_g09.g1)
ACCAG285323AG285324
length686700
length of high quality
(start - end)
464 (68 - 531)383 (78 - 460)
definitionCHROMAT_FILE: MSMg01no058_g09.b1 PHD_FILE: MSMg01no058_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:38 2005CHROMAT_FILE: MSMg01no058_g09.g1 PHD_FILE: MSMg01no058_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,548,666 - 126,549,129)(126,442,231 - 126,442,610)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGAGCCGCGGAAT
TCTTTTATTACCAAATCAAATTTTAGCTACTTAAAATTGACATTTTTGAA
ATTTTCCCCAAAATGTACCAGTTAACTCCATCTCCTTTTGTATTTTCAGG
GCCATGGCTACCTCCCTTTGTGGCTCTCATCTTCTTGCTGAGGCACTGGA
ATGCAAGTACATCCTTTGCAATAACAGTAAGCTTAACTTAAGAGAGCTCC
CCATGGTAAAGCAAGGGTTGCACACCCTCCTGATCTGAAACAGGGAATGA
TAGCAAGAGGGTTCTGTGAGTATCATGGGTTCATTTATACATTTTGTTGA
GGTGGGGTCTTCTATGTAGCCCATACTAGCTTGCTGAGATCATAGCCATA
TACCAGCATGCCCAATAACGCTCATTTAATATACAAAAAAGGTATTCTAG
GGATTTTATGCCTGTTATTTCTAATCCTTAAGATATTATAATTTAATTTA
TATACTTACACTCATTTTAAGGAAACTGAAGTTCCAAGGTAAGAAGCAGC
TTGTTTAGAACATCAGGATAATGATGAAAGAGCCCAGTATTCAACCCAGG
ACTGCCTGATCTCACTTAGAGGCCGCTTTGCACAGTATGGTCCCAGCTCT
ACAATGTTTTACTTTCAGCCCCTCCCTTTCTCGCTA
CCCCCCCCCGATGAAGTGTTAGGCCTGGCGGCCGCCTGTTTCAAGAATGG
AGGTGAACTATAGAATGTCCCGCGAAATTCTAAATTAATAAGGTAGTATT
ATTTAGGACTTTCACTGAGCCTTGAAACATAAAACGTTCATAAAGTGAGG
AATGGAACCAGACCAGGAAATGACAGGTGAATGTGTTCAAATTGTGTGTT
CGAGGTAAAGTACATGTATGAAAGTGCCACAATGAAATCTATTCTTTTAT
ATAGTTAATAAAAGCTAATTAAATAGTGCTCTCAATATACTTATAAAGGA
AAATCATAAGTTTTCTTCTGTTCCATTATTGTGTGTGGTCATGTAAAATT
TATGTGATGTAGATTTATTGGTCTAGGATGCATGTTGCAGTGGTAGAACA
CTTGCTTAATCTGCACAGTGTCCTGAATTCTATCCCCAGCACACATACAC
ACACACACACACACATATACACATACACACTCACACACTCACATACACAC
ACACACACATATTCACAAACACTCTCCATTGTGTTATGATCCTCCGTTGA
TCATTGATTTTTATATTATGACATATGCCGTTTACTATATATTGTTAAAT
GAGAAGGTAGAGAATCAGATCTTAACAAATTATATTTAAGAAAAAAGCTA
CTGTCCCCAAGACAACATCCCATTTGCCTCCACTTTTATATTATTTCAAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_g09.b1 MSMg01no058_g09.b1 CHROMAT_FILE:
MSMg01no058_g09.b1 PHD_FILE: MSMg01no058_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:38 2005
         (464 letters)



>mm_chr3_126548515_126549378
          Length = 864

 Score =  897 bits (464), Expect = 0.0
 Identities = 464/464 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaattttagctacttaaaattgacatttttgaaattttccccaaaatgtaccagttaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaattttagctacttaaaattgacatttttgaaattttccccaaaatgtaccagttaact 556

                                                                       
Query: 61  ccatctccttttgtattttcagggccatggctacctccctttgtggctctcatcttcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ccatctccttttgtattttcagggccatggctacctccctttgtggctctcatcttcttg 496

                                                                       
Query: 121 ctgaggcactggaatgcaagtacatcctttgcaataacagtaagcttaacttaagagagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctgaggcactggaatgcaagtacatcctttgcaataacagtaagcttaacttaagagagc 436

                                                                       
Query: 181 tccccatggtaaagcaagggttgcacaccctcctgatctgaaacagggaatgatagcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tccccatggtaaagcaagggttgcacaccctcctgatctgaaacagggaatgatagcaag 376

                                                                       
Query: 241 agggttctgtgagtatcatgggttcatttatacattttgttgaggtggggtcttctatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agggttctgtgagtatcatgggttcatttatacattttgttgaggtggggtcttctatgt 316

                                                                       
Query: 301 agcccatactagcttgctgagatcatagccatataccagcatgcccaataacgctcattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 agcccatactagcttgctgagatcatagccatataccagcatgcccaataacgctcattt 256

                                                                       
Query: 361 aatatacaaaaaaggtattctagggattttatgcctgttatttctaatccttaagatatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aatatacaaaaaaggtattctagggattttatgcctgttatttctaatccttaagatatt 196

                                                       
Query: 421 ataatttaatttatatacttacactcattttaaggaaactgaag 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ataatttaatttatatacttacactcattttaaggaaactgaag 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no058_g09.g1 MSMg01no058_g09.g1 CHROMAT_FILE:
MSMg01no058_g09.g1 PHD_FILE: MSMg01no058_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:38 2005
         (383 letters)



>mm_chr3_126442031_126442813
          Length = 783

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctaaattaataaggtagtattatttaggactttcactgagccttgaaacataaaacgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctaaattaataaggtagtattatttaggactttcactgagccttgaaacataaaacgt 260

                                                                       
Query: 61  tcataaagtgaggaatggaaccagaccaggaaatgacaggtgaatgtgttcaaattgtgt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagaaagtgaggaatggaaccagaccaggaaatgacaggtgaatgtgttcaaattgtgt 320

                                                                       
Query: 121 gttcgaggtaaagtacatgtatgaaagtgccacaatgaaatctattcttttatatagtta 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttgaggtaaagtacatgtatgaaagtgccacaatgaaatctattcttttatatagtta 380

                                                                       
Query: 181 ataaaagctaattaaatagtgctctcaatatacttataaaggaaaatcataagttttctt 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ataaaagctaattaaatagtgctctcaatagacttataaaggaaaatcataagttttctt 440

                                                                       
Query: 241 ctgttccattattgtgtgtggtcatgtaaaatttatgtgatgtagatttattggtctagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgttccattattgtgtgtggtcatgtaaaatttatgtgatgtagatttattggtctagg 500

                                                                       
Query: 301 atgcatgttgcagtggtagaacacttgcttaatctgcacagtgtcctgaattctatcccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgcatgttgcagtggtagaacacttgcttaatctgcacagtgtcctgaattctatcccc 560

                               
Query: 361 agcacacatacacacacaca 380
           ||||||||||||||||||||
Sbjct: 561 agcacacatacacacacaca 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)