BAC Information

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BAC

Clone NameMSMg01-058H16
Chromosome3 (Build37)
Map Location 19,621,438 - 19,621,641
singlet/doubletsinglet
Overlap genenone
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh
Downstream geneLOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058H16.T7 (MSMg01no058_h16.b1)MSMg01-058H16.TJ (MSMg01no058_h16.g1)
ACCAG285385AG285386
length694695
length of high quality
(start - end)
252 (62 - 313)204 (68 - 271)
definitionCHROMAT_FILE: MSMg01no058_h16.b1 PHD_FILE: MSMg01no058_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:44 2005CHROMAT_FILE: MSMg01no058_h16.g1 PHD_FILE: MSMg01no058_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGGAATTCC
AGGGTATACTCCATCACTGAGACAGGAATTTGAGGCAGCTGCTCACATCA
CACCTACAGTCAAGACCAGAGGGAAAGCAGTCTGTTTACTCGGTTACTTG
TTTGTGCTCAGCTCAATTACATTTTCCACTTTTATACTGTTCAGGGCAGC
CTGCCTAGAGAATGATACCACAATGGGCTAGGTTTTCTCACACTAACAAG
ACAATCCTCTACAGACATGGCCAGCCTGATCTAGACAATTCTTTCCAGGT
GATTCTAGGTTATGTCAAGTAGACAGTTAGAGCTAATGAGCATATATGCA
AAATACGAAGTCAACGAGAGACAAGGTCTTACAATCCTTCTGAGGACGCG
CTTCAAGATCCTAGTATCTTCCTACTAGGTAAGACCCTCTTAAAGACCCA
CTACTATCCGCCAATTTTACTTTGGGGTCCAAGACATCTGAACTCTTACG
TGGAACATCATAATATTCAATACCCGCACCTGTCAGCCTGATAATTATTG
TCATCCAAACGGCGGATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTACCCCTCCCACAAACTCTATATTACAACCATCGCTTTT
TGTCCTCGATACCCTTTTTTTTCACATTAACCCTGCCCCATATT
GCATGGCGTAGGCTGGAGGACGCCTGTTTCAAAAAGGGAGGTGAACTATA
GAATTTCCGCGGCAATCAAAAACTCACTCTTCTTCCATTGCCATTTACAG
CGGCATTTGAAGACAGGCATCTGGATGGAAGTATCTGTATAGTTTAGCTT
TCAAATTATCAGGGAACTTTAAAGGGTAAAATAGACTTGGAAAATATACT
TTTGAGGGGAAAAGGGAAATTCTATATGAGTTGAAAACATCCATGACCGA
GGCGATGGCAAGATGCAGTTGGTAGGCAGCAGGATCGCGCTGGAAAGAAC
GTGCAACCTCCCATTCTTGAGAAGAAGAGTTGCGTGGAAGCTTAGTTGTC
GCTTCTTAATATTGGGGAACAAACTGCCAATATATTGTGATGAGATTATA
TAAAGTTAAATCATCTTTTTTCCCTTTTAACTCTTTATTATATGATGGAT
TCCTAAATACTTTCAAAACATACGTTCTTACCGAGTTTCCTAAGGCTAGG
ACCTAGGAAACAAGGAATGATCCACTGTTGTCTCTCCCCAGGTTTAGCGT
TATTAAAATTACGATGTGTCTCCCCTCCTTTCAATTTATGTATGAAGATG
TGCACTGTGGACATTTGAAATTGCCCTTTTCCGCCGATAACCACTGGGTA
CCCTATAAATGATAATGCGTAAAAAATGTTATGTTGCTTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_h16.g1 MSMg01no058_h16.g1 CHROMAT_FILE:
MSMg01no058_h16.g1 PHD_FILE: MSMg01no058_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:44 2005
         (204 letters)



>mm_chr3_19621238_19621841
          Length = 604

 Score =  371 bits (192), Expect = e-107
 Identities = 201/204 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaactcactcttcttccattgccatttacagcggcatttgaagacaggcatctggatg 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 404 aaaaactcactcttcttccattgccatttacagtggcatttgaagacaggcatctggatg 345

                                                                       
Query: 61  gaagtatctgtatagtttagctttcaaattatcagggaactttaaagggtaaaatagact 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gaagtatctgtatagtttagttttcaaattatcagggaactttaaagggtaaaatagact 285

                                                                       
Query: 121 tggaaaatatacttttgaggggaaaagggaaattctatatgagttgaaaacatccatgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tggaaaatatacttttgaggggaaaagggaaattctatatgagttgaaaacatccatgac 225

                                   
Query: 181 cgaggcgatggcaagatgcagttg 204
           ||||| ||||||||||||||||||
Sbjct: 224 cgaggtgatggcaagatgcagttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)