Query= MSMg01no058_l13.b1 MSMg01no058_l13.b1 CHROMAT_FILE:
MSMg01no058_l13.b1 PHD_FILE: MSMg01no058_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:02 2005
(288 letters)
>mm_chr3_119991758_119992447
Length = 690
Score = 514 bits (266), Expect = e-150
Identities = 285/292 (97%), Gaps = 6/292 (2%)
Strand = Plus / Minus
Query: 1 cctgtgtccatcaaacagaacacacaggatcacagctagagctgttcttgactcttgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 490 cctgtgtccatcaaacagaacacacaggatcacagctagagctgttcttgact-ttgcaa 432
Query: 61 tttcattgactgacagtttaatatctatttattttcacatctgacactagtaaagacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttcattgactgacagtttaatatctatttattttcacatctgacactagtaaagacagg 372
Query: 121 ctggcatcatgaatgtcaagacattatgctgacaacta-tttttttttcatcttt--ggg 177
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 371 ctggcatcatgaatgtcaagacattatgctgacaactattttttttttcatctttggggg 312
Query: 178 gggtggtggtggaggaaggttcaacactgtgaagaaaagtgttcttttcaatgactgcag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gggtggtggtggaggaaggttcaacactgtgaagaaaagtgttcttttcaatgactgcag 252
Query: 238 ctccagtaaagactc-tattacagttcagatataattggcagtagctattga 288
||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 251 ctccagtaaagac-caaattacagttcagatataattggcagtagctattga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 690
Length adjustment: 9
Effective length of query: 279
Effective length of database: 681
Effective search space: 189999
Effective search space used: 189999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no058_l13.g1 MSMg01no058_l13.g1 CHROMAT_FILE:
MSMg01no058_l13.g1 PHD_FILE: MSMg01no058_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:02 2005
(552 letters)
>mm_chr3_119878694_119879645
Length = 952
Score = 1060 bits (548), Expect = 0.0
Identities = 551/552 (99%)
Strand = Plus / Plus
Query: 1 tttctgcacccttgcctgtcatcattttgcagtttcagctgctcaactccgagctggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctgcacccttgcctgtcatcattttgcagtttcagctgctcaactccgagctggaag 260
Query: 61 aggctgtctgagcttctgctccatgtactggtagtacctccaaacacttgaggcctgata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctgtctgagcttctgctccatgtactggtagtacctccaaacacttgaggcctgata 320
Query: 121 ctggcagaatgagagccagtcatttcttgacatttagtactcagaaagcggtgtcaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggcagaatgagagccagtcatttcttgacatttagtactcagaaagcggtgtcaattt 380
Query: 181 gcttttacatgacaaagtaggatacatttgttctttttcaaaagtccatcttgtttggta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttttacatgacaaagtaggatacatttgttctttttcaaaagtccatcttgtttggta 440
Query: 241 gcaatatgattgacactttttaattatgcaaattggcaattttatacctctgtatacatg 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaaatgattgacactttttaattatgcaaattggcaattttatacctctgtatacatg 500
Query: 301 aaactctagcaggtcaagcctggattttatatttcattttatatatactctttacatggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaactctagcaggtcaagcctggattttatatttcattttatatatactctttacatggc 560
Query: 361 ctagaactctctaagggctacttttatcacacaaagagaggcagccctttcttgtatgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctagaactctctaagggctacttttatcacacaaagagaggcagccctttcttgtatgtg 620
Query: 421 gccccaactcctattccaataaagatcaaatgttaacaatgaacttaacagaaacataag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccccaactcctattccaataaagatcaaatgttaacaatgaacttaacagaaacataag 680
Query: 481 gaacatcttgcattgttttcttatatattatgttgcatcttatatacataatattgtata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaacatcttgcattgttttcttatatattatgttgcatcttatatacataatattgtata 740
Query: 541 aaatattatatt 552
||||||||||||
Sbjct: 741 aaatattatatt 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
