BAC Information

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BAC

Clone NameMSMg01-058N05
Chromosome3 (Build37)
Map Location 43,049,558 - 43,049,804
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039204, LOC100039219
Downstream geneLOC677788, LOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058N05.T7 (MSMg01no058_n05.b1)MSMg01-058N05.TJ (MSMg01no058_n05.g1)
ACCAG285648AG285649
length713763
length of high quality
(start - end)
248 (74 - 321)90 (125 - 214)
definitionCHROMAT_FILE: MSMg01no058_n05.b1 PHD_FILE: MSMg01no058_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:10 2005CHROMAT_FILE: MSMg01no058_n05.g1 PHD_FILE: MSMg01no058_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCACTTTCCCCTTGACTCCATCAACTGGTTCTTTTCCACATCT
AAGCTACTATGGTCCCTGTCTACCCCACCTAACTATTATCTTCATTGTCT
ATTCTGTCTTCCAACAAACTAGTCTATACCCTTTGTAACATCCCAAAGTA
CTCCCTTAAATTTCTAATATTGGTAGCTCTAAGTATATCATTATTCATGT
ACTGTTCATAACCCAAGTTTTACCTCAGCTTATCTGTATCCTGTTTCCTA
ACTCCATGAGTTTAAACAGTTTGTTATGTGCCAAGAGATTATTTCCTGTG
ACATTTCTGCTTTTCCTTTACCGCCCCCTCACTCTGAATTATCTTCTTGT
GAACAAGCAAATAGCCTATGGCTATAAAAAAAAGAGAACACCTTCCTCCT
CACAGACAGGGGAAATTGTATTTCTTTTTTTTAATTGGGTATTTTATTCA
TTTACATTACAAATGCTATTCCGAAAGTCCCCCATACTTCCCCCCCTCCA
GCTCTCCCACCCACCTACTTCCACTTCTTGGCCCTGGTGTTCCCTTGTAC
TGTGTTATATAAAGTTTTCAAGACCATCGAGCCCTCTCTTCCCAATGAAG
GCTCTACTAAGCCATCCTTTCGCTACATATTTCACCTAGAGCACTGACCT
ATTGGATGTCTAA
TGATNAACAAAAGGACGGNNNNGGCCCACCACTCCCCNNAAAGNNNNNNN
NCNATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTTTGCCAATTTGTATACCATTTA
TCTACTTTTATTGTCTTATTGCCCTAGCTAGAACTTGAAGTACTATATTG
AATTGGGAGAGAGTATGAGCCTTGCCTTGCCTTGCCCCTGATCTTTAAGG
GATTGCATTGTTAATTTCCATTAACTTGATGTTGCTTTTGGCTTGCCGGA
AATTACTTTTATTATGGTTTAAGCCTGTGGCATGGAATTTTTAAACTTCC
TTCAAAATTTTTAAACTTGAAAGGTTTTTTTTTATTTTTTTCCCAAAAGG
GTTTTTTTTTCCCAAATTTTAAAAGTGATATTTAACACCCCCCCCTCCTC
CTCTTTTTTGGAGGTTCTACATATTTATAAGGGGGAGAAAACAAATTCTG
GGGGGGCGGCTTTTTCTCATTTCTATCGAAAAAATTTTCTCCGGGATAAC
CTTTTTGTGGCTTAAAAAACCCCCTCCTTTTTTTTCTTGGCGTGGAAAAA
AGAAAAACCCTTCTTTAAAAGAGGCCTTTCACAAAACCTACACCTTCCTG
TGCGGGCGGGTTTCTTTTGCTAAATCTAATATAAACTCGTCTCTACTAAT
CCAATTTTGTCCCTCTGTGCTCCTCCAACACACAAACTCTTCTCTTGGAA
ATTTTTAATAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_n05.b1 MSMg01no058_n05.b1 CHROMAT_FILE:
MSMg01no058_n05.b1 PHD_FILE: MSMg01no058_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:10 2005
         (248 letters)



>mm_chr3_43049358_43050004
          Length = 647

 Score =  412 bits (213), Expect = e-119
 Identities = 239/251 (95%), Gaps = 7/251 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccatcaactggttcttttccacatctaagctactatggtccctgtcta---ccccacct 57
           |||||||||||||| ||||||||| ||||||||||||||||||||||||       ||||
Sbjct: 447 tccatcaactggttgttttccacaactaagctactatggtccctgtctatgg----acct 392

                                                                       
Query: 58  aactattatcttcattgtctattctgtcttccaacaaactagtctataccctttgtaaca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aactattatcttcattgtctattctgtcttccaacaaactagtctataccctttgtaaca 332

                                                                       
Query: 118 tcccaaagtactcccttaaatttctaatattggtagctctaagtatatcattattcatgt 177
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tcccaaagtgctcccttaaatttctaatattggtagctctaagtatatcattattcatgt 272

                                                                       
Query: 178 actgttcataacccaagttttacctcagcttatctgtatcctgtttcctaactccatgag 237
           | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 271 attgttcataacccaagttttatctcagcttatctgtatcctgtttcctaactccatgag 212

                      
Query: 238 tttaaacagtt 248
           |||||||||||
Sbjct: 211 tttaaacagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 647
Length adjustment: 9
Effective length of query: 239
Effective length of database: 638
Effective search space:   152482
Effective search space used:   152482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)