BAC Information

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BAC

Clone NameMSMg01-058N13
Chromosome3 (Build37)
Map Location 30,249,414 - 30,249,914
singlet/doubletsinglet
Overlap geneMds1
Upstream gene6130401L20Rik, LOC100040676, Evi1
Downstream geneLOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058N13.T7 (MSMg01no058_n13.b1)MSMg01-058N13.TJ (MSMg01no058_n13.g1)
ACCAG285664AG285665
length710708
length of high quality
(start - end)
457 (46 - 502)506 (76 - 581)
definitionCHROMAT_FILE: MSMg01no058_n13.b1 PHD_FILE: MSMg01no058_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:12 2005CHROMAT_FILE: MSMg01no058_n13.g1 PHD_FILE: MSMg01no058_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTGTATCACTGGAAATCTTTGTGTAGCTAAGCTGGGAGACACTC
TATTCTTGTTTAAAAGTGAAACTTATAACAATAGATGTGGTGGTTTGAAT
AAGAGTTGCCCCTCATTGGCCCAACTATTTGAATTCTTGGTCCCTAACTG
GTGGAACTATTTGGGGAGGATTGGAAGGTATGGCCTTGTTAGAGGAGGTG
TGTCACTGGAGTTAAGCTTTGGGTTCCAAAAGCTCATGGCATTCCCAATT
AGTGCCCCACCCCTGCTTTGTGGTTGCTGTCTCAAAATGTAAGCTCCCAG
CTACTGTTCCAGCACCATGGCTGCCTGCCTTGCTTTCCACCATGCTGGTC
ACAGCCTTACCCTCTGGAACTGTAAGTAATCCCCCAATTAAATATTTTCT
GTTATAAGTTGCCTTGGTCATGTTGTCTCTTCACAGCAATAGAAAAGTAA
CGGAGACAGTAGACTTTCATCATTTTCTTTCTAGTATGTTTGTACTAAAC
TTAGCATCACAGGTAATAGGCTGCAATTGTGAGTCACCGAATGCTTCCGA
ACTTCTCCACTCTCAAACTGGGCCTACTTGTATTTCAGTGTGATAAGCTC
ACACTTACGGGATGGTGACCTTTAGGGGTTTAATCACTTTACAAATGGAA
GTAGGTTACN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCTTAGAGATAAGTTTAGCCCTTC
AACAACAAGGCAATGTCTTCTCTGTTGCTTAGGCTACAAGACGCTTACCT
CCGAGTAGCCTGGATAAGATTTTAAATGCCTCTGTCATAGTGGTTGGCCA
CTATGACAGGAACTGTTGGCCAGGTCCCTTCCCTACCCATCTGTTAGGTT
AGTGTTATTCTTCCGGCACAAAGTGGCTCAGACATGGACTCTACATAGGA
AGATCGATCTCCTCAGAAATACTAAATTCTCAAATGAACAATGTTCCTAA
AATACAGCTTACAAACACATGTAGGAAAATGGGAGGTTTAATTGGGGAAA
CAAAAACTTAATCCATTGCCAAATTAATTAGTTAGCCCTTATCTTCTCTT
TGAACATAATGCCCGTGTCAGGGTGATGGAGGCTGGTGCCTTGTACGTGC
CTGTGCAGCTACTTAAAAGCATATAGCTCTCCCTCCTACTAGGGAATTCA
TCATTGTGTTTTATATTAACTTTTCTCTTGTGATAGGGCTGCTTTCCAGG
AGAAAGAGGTAGCACAGGAAAAGAGAAAAATTCTGTGAGGTTTTCTTTTA
TCTTCATCCTGAAATTATGTTCTACCATTGCACCATGAGGTCGGATCAGG
TTCCGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_n13.g1 MSMg01no058_n13.g1 CHROMAT_FILE:
MSMg01no058_n13.g1 PHD_FILE: MSMg01no058_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:12 2005
         (506 letters)



>mm_chr3_30249214_30250119
          Length = 906

 Score =  913 bits (472), Expect = 0.0
 Identities = 496/508 (97%), Gaps = 9/508 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcttagagataagtttagcccttcaacaacaaggcaatgtcttctctgttgcttaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 agcttagagataagtttagcccttcaacaacaaggcaatgtcttctctgttgcttgggct 260

                                                                       
Query: 61  acaagacgcttacctccgagtagcctggataagattttaaatgcctctgtcatagtggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaagacgcttacctccgagtagcctggataagattttaaatgcctctgtcatagtggtt 320

                                                                       
Query: 121 ggccactatgacaggaactgttggccaggtcccttccctacccatctgttaggttagtgt 180
           |     ||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 g-----ta--acaggaactgttggccaggtcccttccctacccatctgttaggttagtgt 373

                                                                       
Query: 181 tattcttccggcacaaagtggctcagacatggactctacataggaagatcgatctcctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tattcttccggcacaaagtggctcagacatggactctacataggaagatcgatctcctca 433

                                                                       
Query: 241 gaaatactaaattctcaaatgaacaatgttcctaaaatacagcttacaaacacatgtagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaaatactaaattctcaaatgaacaatgttcctaaaatacagcttacaaacacatgtagg 493

                                                                       
Query: 301 aaaatgggaggtttaattggggaaacaaaaacttaatccattgccaaattaattagttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aaaatgggaggtttaattggggaaacaaaaacttaatccattgccaaattaattagttag 553

                                                                       
Query: 361 cccttatcttctctttgaacataatgcccgtgtcagggtgatggaggctggtgccttgta 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 554 cccttatcttctctttgaacataatgtccgtgtcagggtgatggaggctggtgccttgta 613

                                                                       
Query: 421 cgtgcctgtgcagctacttaaaagcatata--gctctccctcctactagggaattcatca 478
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 614 cgtgcctgtgcagctacttaaaagcatatatagctctccctcctactagggaattcatca 673

                                       
Query: 479 ttgtgttttatattaacttttctcttgt 506
           ||| ||||||||||||||||||||||||
Sbjct: 674 ttgcgttttatattaacttttctcttgt 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)