Query= MSMg01no059_c22.b1 MSMg01no059_c22.b1 CHROMAT_FILE:
MSMg01no059_c22.b1 PHD_FILE: MSMg01no059_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:37 2005
(694 letters)
>mm_chr3_16783594_16784687
Length = 1094
Score = 1259 bits (651), Expect = 0.0
Identities = 681/691 (98%), Gaps = 1/691 (0%)
Strand = Plus / Plus
Query: 4 ggaattctcataattaataac-gcaggcattggaaccagctcctggccagggtctagaac 62
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctcataattaaaaagagcaggcattggaaccagctcctggccagggtctagaac 262
Query: 63 aggtgcactccattgagaggatcatgacaaccagtcggtcaagtagcataaaagcctaga 122
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 263 aggtgcactccattgagaggatcatgacaaccagtcagtcaagtagcataaaagcctaga 322
Query: 123 gttctccatgctaatgacttatcaagacatgccccaagtatttatacaatgatcttctct 182
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 323 gttctccatgctaatgacttatcaagatatgccccaagtatttatacaatgatcttctct 382
Query: 183 tcttgagcatccttcctgcaaaaggtacttaatccttggttcaccctgaataagacttat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcttgagcatccttcctgcaaaaggtacttaatccttggttcaccctgaataagacttat 442
Query: 243 gcattcatatctgccatgaataaagcagtttggacaagtaaggagtgtctctttcatcaa 302
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 gcattcatatctgccatgaataaagcagtttggacaagcaaggagtgtctctttcatcaa 502
Query: 303 ggattgctgttggcataagccttcatcataacaagccacacctaagtctcctggagaagg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggattgctgttggcataagccttcatcataacaagccacacctaagtctcctggagaagg 562
Query: 363 actttcttccagtttctctgtacttttggcactcacttagaaccaaacctgattccctct 422
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 actgtcttccagtttctctgtacttttggcactcacttagaaccaaacctgattccctct 622
Query: 423 gtccctcgttcagccacccccttcctgcctcaaagagaaagggaagctcagttctttgtt 482
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 623 gtccctcgttcagccacccccttcctgcctcgaagagaaagggaagctcagttctttgtt 682
Query: 483 ccctgctcccaaatcctcagggtcccgagcagcatctgggtatacaggagactggaaacc 542
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccctgctcccaaatcctcacggtcccgagcagcatctgggtatacaggagactggaaacc 742
Query: 543 accattctcaactcctcattgtccacagcaaggtctgggtgcacaggagattgaaaacca 602
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 743 accattctcaactcctcattgtgcacagcaaggtctgggtgcacaggagattgaaaacca 802
Query: 603 cagcatccatcctagatctcattgtttgatttttctcacccataggaatggctgggaccc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cagcatccatcctagatctcattgtttgatttttctcacccataggaatggctgggaccc 862
Query: 663 ctatcttacaatgcgttctgccttccctgag 693
|||||||||||||||||||||||||||||||
Sbjct: 863 ctatcttacaatgcgttctgccttccctgag 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_c22.g1 MSMg01no059_c22.g1 CHROMAT_FILE:
MSMg01no059_c22.g1 PHD_FILE: MSMg01no059_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:37 2005
(664 letters)
>mm_chr3_16875491_16876553
Length = 1063
Score = 1046 bits (541), Expect = 0.0
Identities = 620/669 (92%), Gaps = 43/669 (6%)
Strand = Plus / Minus
Query: 1 cctgctttttctaatgaaaattactggggaaagtgcattctaagttcaaataataattga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 cctgctttttctaatgaaaattactggggaaagtgcattctaagttcaaataataattga 595
Query: 61 caa--aata-ttgttaaaatattaaaggcacttactattgctgtcttactatctgtttat 117
||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 594 caaacaatagttgttaaaatattaaaggcacttactattgctgtctta----ctgtttat 539
Query: 118 agattttcgtaaagattacacaaaatgtaatggaggctcaggagttgctcctgttttatc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 agattttcgtaaagattacacaaaatgtaatggaggctcaggagttgctcctgttttatc 479
Query: 178 gttagtttacattggtcttaccttgagtctttcctgttataacctctgttgtggtgagtc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gttagtttacattggtcttaccttgagtctttcctgttataacctctgttgtggtgagtc 419
Query: 238 atatgtatatatgaaacatattgtaaaaggaatctactgtgtccacatgctgctgtgttt 297
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atatatatatatgaaacatattgtaaaaggaatctactgtgtccacatgctgctgtgttt 359
Query: 298 accgattcattactcactgaactattttgtactggatgtgatttggtaaaagtattttgt 357
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 358 accgattcattactcactgaactattttgtactggatatgatttggtaaaagtattttgt 299
Query: 358 taatgctgtttttgcttttaccaaagtgtttatactttggtagcatcaagtactttcatg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 taatgctgtttttgcttttaccaaagtgtttatactttggtagcatcaagtactttcatg 239
Query: 418 acactcatacaactatgaccccaaacatgtacatgcattaatcaacaacagagataagtc 477
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 238 acactcatacaactatgaccccaaacatgtacatgcat---------------ataa--- 197
Query: 478 atatacaaacaagaagaataaacaacttgtttctgatgtattaaaaaagtatctgcagac 537
|||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ------aaac---aagaataaacaacttgtttctgatgtattaaaaaagtatctgcagac 146
Query: 538 acatagtgcctttgcttgtagttgtttttcttcttaattctaatcactctgacttctact 597
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 145 acatagtgcctttgcttgtagttgttt---ttcttatttctaatcactctgacttctact 89
Query: 598 aagcttcaacaacacagtcacagactcaaatctgaatggatggactt---atatatgaat 654
|||||| |||||||||||| ||||||||||||||||||| ||||| | ||||||||
Sbjct: 88 aagctt---caacacagtcacggactcaaatctgaatggattgacttaacagatatgaat 32
Query: 655 ctctaaagc 663
|||||||||
Sbjct: 31 ctctaaagc 23
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space: 688662
Effective search space used: 688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
