BAC Information

Click to search

BAC

Clone NameMSMg01-059E19
Chromosome3 (Build37)
Map Location 122,465,323 - 122,465,666
singlet/doubletsinglet
Overlap genePde5a
Upstream geneAbcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1
Downstream geneLOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059E19.T7 (MSMg01no059_e19.b1)MSMg01-059E19.TJ (MSMg01no059_e19.g1)
ACCAG286011AG286012
length785709
length of high quality
(start - end)
172 (54 - 225)575 (82 - 656)
definitionCHROMAT_FILE: MSMg01no059_e19.b1 PHD_FILE: MSMg01no059_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:46 2005CHROMAT_FILE: MSMg01no059_e19.g1 PHD_FILE: MSMg01no059_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACACGGA
GCGCGCGGAATTCTTAAGATTGCGCTTGGGGGTGTTGGTTTGACCATGCT
CGGGTTTGCTTTAGATGTGTCTGTGGTTTAGTGAGAGTTTAGTTAGATGT
TTCAGGCTGGCTCAGAACTCAGAATTTTCCCATCTCAGCCTCCTGAATGC
TTAGATTAAGGTGTGCCCTACTACGTCAGACAAGCTACATATATGTGCAT
GTATATGCATATTTATATATAGAGTATATATCTACCATATATATCTATTA
ATTAGACTATACACATGTTCTGCCTACTTTTTTGTATCTTCACCGAGTAT
GGGGCTAAAAAAATATACAAGAGGGTGTCAAATTATAATCGAACAAGAAT
AAAAAGTAAAGAGAAGAGAAAACAGTTGTCCCCACCAAAAGTAAAAACAA
AACAAAAACACAATTATGAACTATTAATAAATATCAAACCATCCTCACAA
CTATACCATGTTACACCCATCAACACCGCTTATTCGTAACACCAATTAAC
ACCATCTAAGCAACCAAAACTACTAATCAATATAATTTAATACATAAACA
AAACACTAAACTTATAAGACCAACTAAAATAATAATCATATATAATACTA
TTAACATAAAAAACCAAAGATAAGAAAACCTAAACCAAAGCCCCAAGTAA
AAGACATAAAAATTACACAAAATGTCAAAAAAAGCACAATTAATATACAC
ATCCTACCATCATACACCCAATTATACATATAATG
AAAACCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTATGAGGATAAACCATA
GGCAAGCATGGGTTTATACTCTGCTGTCTCAGAGCCCATGCAGAAAATTC
TCTGCTACACAGTTGAGTTTAAGCCAGGCACAAATTTTATAGAAACCTAC
AGTGGCTTTTGAATCTCTAAGGACCTGGTGGTTAGAATCAGAAATGTCTC
CCATAGGTTTGGGTATTTGAACATTCGGTCCCCAGTTGGTAGTGTTATTT
GTGGAGAATCCAAGGAGGTTAAGAATGTCAATGGAGACAGTCACTGGGAG
GTCATAGCTCTGCCCCACTTCCAGGCCACTCTGTCTGCTTTGTGCTTGAG
TATGGAGTTGTGGTCTCTCAGCTCCCTACTCTGGTGAAAAACGGCCATGC
CTCTCTCATCATTGTGGAATGACTCTCCCTCTGATAACACAAACTGAAAT
GAAACTTCTCCCTTATGTTGTCCTTGGTCAAGATGTTTTATCACAGCACC
ATAAAAACAGTTAATACAGGCATTCCAGCTTACCTGGTATTAAAGGTTAA
TTTTATATATCCTCCTCTTTTAGTGACTCCAGGCAACAAGTGCAACTATT
TCTGAATATATCTGTGAAGGTGTCTCGAGAAGAATATCCCCTGAATCAAC
AGACTCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_e19.g1 MSMg01no059_e19.g1 CHROMAT_FILE:
MSMg01no059_e19.g1 PHD_FILE: MSMg01no059_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:46 2005
         (575 letters)



>mm_chr3_122465323_122466297
          Length = 975

 Score =  557 bits (288), Expect = e-163
 Identities = 333/354 (94%), Gaps = 10/354 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtatgaggataaaccataggcaagcatgggtttatactctgctgtctcagagcccatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agtatgaggataaaccataggcaagcatgggtttatactctgctgtctcagagcccatgc 285

                                                                       
Query: 61  agaaaattctctgctacacagttgagtttaagccaggcacaaattttatagaaacctaca 120
           |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 284 agaaaattctctgctacatagttgagattaagccaggcacaaattttataaaaacctaca 225

                                                                       
Query: 121 gtggcttttgaatctctaaggacctggtggttagaatcagaaatgtctcccataggtttg 180
           ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 224 gtggcctttgaatctctgaggacctggtggttagaatcagaaatgtctcccataggcttg 165

                                                                       
Query: 181 ggtatttgaacattcggtccccagttggtagtgttatttgtggagaatccaaggaggtta 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 164 ggtatttgaacattcggtccccagttggtagtgttatttgtggaggatccaaggaggtta 105

                                                                       
Query: 241 agaatgtcaatggagacagtcactgggaggtcatagctctgccccacttccaggccactc 300
           ||||||||| |||||| |||||||||||||||||||||||||||||||          ||
Sbjct: 104 agaatgtcagtggagatagtcactgggaggtcatagctctgccccact----------tc 55

                                                                 
Query: 301 tgtctgctttgtgcttgagtatggagttgtggtctctcagctccctactctggt 354
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 54  tgtctgctttgtgcttgagtatggagtcgtggtctctcagcttcctactctggt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)