BAC Information

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BAC

Clone NameMSMg01-059L04
Chromosome3 (Build37)
Map Location 130,772,093 - 130,772,561
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568
Downstream geneLef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1, Dkk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059L04.T7 (MSMg01no059_l04.b1)MSMg01-059L04.TJ (MSMg01no059_l04.g1)
ACCAG286315AG286316
length711760
length of high quality
(start - end)
473 (45 - 517)157 (75 - 231)
definitionCHROMAT_FILE: MSMg01no059_l04.b1 PHD_FILE: MSMg01no059_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:16 2005CHROMAT_FILE: MSMg01no059_l04.g1 PHD_FILE: MSMg01no059_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCTAAATACCCGTTCCAGAGTCAAATTCATATCTCACAAGGCTCT
ACCATCCTTATTATAGTAGATTAAAGGGACAAATGAGTGTTTGACCATAG
CTGGTTATGGTATCCATTTAGGAGAGATATCTTAGATACGGCTGAATTAC
GAGGCTGATCAGGCAATAGGCTGTATAACAGGCTCCTATCCCCAGGAGAG
TTCAGCCTCAGTTCCAGCCACAATGTCTATCAAGTGGCCAATCAGGCTTT
CTGAAAGCCCTGAGATAGAGCCTGGACATTGAAACAGTAGCTGTGGACAC
TGTCACTTTGTCAGTCCATCTTTGTGGATATACGTAATAAAGTACTGCAT
GTATGCACCTCGCTCCTAGCTTCATCCATAACAAACACAGAAGGCACTAT
TGCAGTTCATTCTTTGTGCTTGTTTGCTTGTTTGTTGAGACAGGGTTTCT
CTGTGTAGCCCTGGCTGTCCTGAAACTCACTCTGTACACCAGGCTGGTCT
CATACTCAGAAATCTGCCTGCCCCTGTCTCCCCAAGTGCTGGGACTAAAG
GGCTGCTACCACCCCCGCCTGGGTTTTTTTTTTTTTATTGTAGTTTATTC
TTATCCCATTTCCTAACCTGATATTGTTTCCCTGCGTGGCTTGAGGAATT
GGCCATGCCTG
GATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATTCAGTGGCTCACAATCCCCTGT
AACTTCATCTCCAGGGGACATCGGATGCTCCCTCCTCCATGGGCACTTGC
ACTCACATATATTTAAGGATAAAAACGAAGCTTTGACTGCGTGAGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTCATTACACCACTCTTT
TTCTTTTTTCTTTCTCTTTCTCTTTTCCTCTCTCTCCTACTTTTTTATCT
CTCTCTTTCTTTTCTCTTTCTTTTTTTTTTCCTTTTTTTCCTCTTCCCTC
TCTCACTTACTACTCCTTTCTTTTCTCCTTTCTTCTTTCCTTTCTTTTTC
TTTTATCCTTCACTCTTTTTTCTCCCCCTCTTTATTTTTTCCTTTTTCCT
TCCTCTCTTTCTCCTTTCTTTTTTTCCCTTTTTTCCCCTTTACCTCTTCC
TCTCTTTTGCTACTCCTTTTCCCTTACTTACTCTTCCTCTCTCCTTTTCT
CCCTCTCTCGTATATAATTATCATTATACCTTTTCTTCTATCCATCCCTA
CTTTCCTCTCTTTTCTTCTTCCCCTTTCTCTCTATTCTACTCTCCCTCAT
TTCCCATTCCTTCCTTCCTTTCCTCTTCTCCATTACTCTCCTCTTCTTTC
CTCCTTTTCTATCCCTCTTCTCTCTCTTTTCCTACTCTTTTCTTCCATAA
TACCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_l04.b1 MSMg01no059_l04.b1 CHROMAT_FILE:
MSMg01no059_l04.b1 PHD_FILE: MSMg01no059_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:16 2005
         (473 letters)



>mm_chr3_130771930_130772802
          Length = 873

 Score =  868 bits (449), Expect = 0.0
 Identities = 464/469 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccctaaatacccgttccagagtcaaattcatatctcacaaggctctaccatcct 64
           ||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 632 gaattcccctaaatactagttccagagtcaaattcatatctcacaaagctctaccatcct 573

                                                                       
Query: 65  tattatagtagattaaagggacaaatgagtgtttgaccatagctggttatggtatccatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tattatagtagattaaagggacaaatgagtgtttgaccatagctggttatggtatccatt 513

                                                                       
Query: 125 taggagagatatcttagatacggctgaattacgaggctgatcaggcaataggctgtataa 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 taggagagatagcttagatacggctgaattacgaggctgatcaggcaataggctgtataa 453

                                                                       
Query: 185 caggctcctatccccaggagagttcagcctcagttccagccacaatgtctatcaagtggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 caggctcctatccccaggagagttcagcctcagttccagccacaatgtctatcaagtggc 393

                                                                       
Query: 245 caatcaggctttctgaaagccctgagatagagcctggacattgaaacagtagctgtggac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 caatcaggctttctgaaagccctgagatagagcctggacattgaaacagtagctgtggac 333

                                                                       
Query: 305 actgtcactttgtcagtccatctttgtggatatacgtaataaagtactgcatgtatgcac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 actgtcactttgtcagtccatctttgtggatatacgtaataaagtactgcatgtatgcac 273

                                                                       
Query: 365 ctcgctcctagcttcatccataacaaacacagaaggcactattgcagttcattctttgtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ctcgctcctagcttcatccataacaaacacagaaggcactattgcagttcattctttgtg 213

                                                            
Query: 425 cttgtttgcttgtttgttgagacagggtttctctgtgtagccctggctg 473
           |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 cttgtttgtttgtttgttgagacagggtttctctgtgtagccctggctg 164


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)