Query= MSMg01no059_m18.b1 MSMg01no059_m18.b1 CHROMAT_FILE:
MSMg01no059_m18.b1 PHD_FILE: MSMg01no059_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:23 2005
(445 letters)
>mm_chr3_147737689_147738532
Length = 844
Score = 830 bits (429), Expect = 0.0
Identities = 438/441 (99%), Gaps = 1/441 (0%)
Strand = Plus / Minus
Query: 1 ttagtgtcaaagcaagaattaaagcaacatggtgacccagaaagcatcaccacatttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ttagtgtcaaagcaagaattaaagcaacatggtgacccagaaagcatcaccacatttgaa 581
Query: 61 agtgtaactatgattctcacgtcaataaatgtggattatgtcaatttccatggtgataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 agtgtaactatgattctcacgtcaataaatgtggattatgtcaatttccatggtgataat 521
Query: 121 attagataaaattataagtatatgatttagagtctcttcttttgtgagcaaaatctggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 attagataaaattataagtatatgatttagagtctcttcttttgtgagcaaaatctggtt 461
Query: 181 attagggttctctacattcaagatgatacattgttccattctattaccgttacaagccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 attagggttctctacattcaagatgatacattgttccattctattaccgttacaagccac 401
Query: 241 tgtgtatgtattgattttaatgcaggtggatattagcttacctcacattttctgtggtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgtgtatgtattgattttaatgcaggtggatattagcttacctcacattttctgtggtgt 341
Query: 301 taggaatatagtgccagggacattttcaggcaacttttttaatgaagaacagagtgcata 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 340 taggaatatagtgccagggacattttcaggcaacttttttaatgaagaagagagtgcata 281
Query: 361 tctgatgtgttaaccctgagagtggaactgtgggcagctcattttcattcatagtgagtg 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tctgatgtgtaaaccctgagagtggaactgtgggcagctcattttcattcatagtgagtg 221
Query: 421 ggtttttttttgtttgttttg 441
||||||||||| |||||||||
Sbjct: 220 ggttttttttt-tttgttttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 844
Length adjustment: 10
Effective length of query: 435
Effective length of database: 834
Effective search space: 362790
Effective search space used: 362790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_m18.g1 MSMg01no059_m18.g1 CHROMAT_FILE:
MSMg01no059_m18.g1 PHD_FILE: MSMg01no059_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:23 2005
(590 letters)
>mm_chr3_147622582_147623571
Length = 990
Score = 1046 bits (541), Expect = 0.0
Identities = 576/593 (97%), Gaps = 9/593 (1%)
Strand = Plus / Plus
Query: 7 gatgaggagtgtggattgctgtgaggttaaggagagcccccactttatgtcccacctttg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gatgaggagtgtggattgctgtgaggttaaggagagcccccactttatgtcccacctttg 257
Query: 67 acctctcttgcccctttgtctttgcagggaagtgacccaccatgcagggtctcaagagat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acctctcttgcccctttgtctttgcagggaagtgacccaccatgcagggtctcaagagat 317
Query: 127 gctagcaccatgcctttgaaattcccagaatgcaaacctctgagcagaatgaa------- 179
|||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 318 gctagcaccatgcctttgaaattcccagaaggcaaacctctgagccgaatgaaaatctgt 377
Query: 180 --tctctgaaccaccctgccttgatttccgggtacagctgcagaaaatacatcaagagtg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tctctctgaaccaccctgccttgatttccgggtacagctgcagaaaatacatcaagagca 437
Query: 238 ttagaagtggtatagttgagttttgcctctggtagtctttactgtcccatatgtaaataa 297
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttagaagtggtatagctgagttttgcctctggtagtctttactgtcccatatgtaaataa 497
Query: 298 tccataatttgctttgttttagggatttatttataaagtggcctcactgtgaacttacat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tccataatttgctttgttttagggatttatttataaagtggcctcactgtgaacttacat 557
Query: 358 agttctatatttagctgcttcctaagaaggtgtcctcagaaactggtaaacgagaactac 417
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aattctatatttagctgcttcctaagaaggtgtcctcagaaactggtaaacgagaactac 617
Query: 418 aagaaaatattgactttaacggcgagccttgtataacccagaagattgatacaaacatcc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aagaaaatattgactttaacggcgagccttgtataacccagaagattgatacaaacatcc 677
Query: 478 aaatgtaaaggattattttaatattttttcatacaaccttttcctttttatatgatatga 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaatgtaaaggattattttaatattttttcatacaaccttttcctttttatatgatatga 737
Query: 538 aatattttcataaaaatttcccaaccacttttttttctatttcaaagaatttt 590
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 738 aatattttcataaaaatttcacaaccacttttttttttatttcaaagaatttt 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
