NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTAATTGGAAACTGCTCATTTAATTGTTAATATGCAACTGTCT
AATGATGAAAGTGTTCACTGACTTCTATACATGGCAGCATTCTGGGCTTT
GCACAGTGTGTGAGTAACTAAACAAAGTTCAGGGAAGTTTTAGAAAATTC
ATCTAGAAATGCATTATCTCCTCTATGTATTGCTGGACTCTCCTTTTTTG
AATATTTTATTAGGTATTTTCTTTATTTACATTTCAAATGCTATCCTCAA
AGCCCCCTATACCCTCTGTCCACCCTGCTCTCCAACACACCCACTCCTGC
TTCCTGGCCCTGGCATTCTCCTGTACTGGGGCATATGATCTTTGCAAGAC
CAAGGGCCTCTCCTTCCATTGATGGCTGACTAGGCCATCCTCTGCTACAT
ATGCAACTAGAGACACAGCTCTGGGGGGTGGGGGGTGGNNTATCCNNTTT
TTTTTTTTTTTTTTCCTTTTTTTNTTTTTTCTCTTCTTCCTCTCCTCTCC
TCCCCTCCTTTTTCTCCTTCCTCCCTTTCTTCTTTCCCCTCTCCTTTCTC
TCTCTCCTTTCCTTTCTCCTTTCCCCTTCCTTTTTCTTCCCCCTTTCTTC
TCCGCCCTCCTTTTCCTTTCTCCCTTTCTTCTCCTTTCCTTTTTCTTTTC
GCCTTTTCTTTCTCTCTCCCCTTCTCTTC

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAAGCTCTTTATATGTAATTT
TGAACTGATGTTGCCAAAATGTAAGTGTGCTATCAAATTGTGTGAATATA
TAGAGATGATGCGAACTTTACCTCAAGCCAAAAATAAGTTGAATTTTAAG
AATCCAAACTAAATATTCCTATAACTCACAGTACAACTACATGAAGCACT
AAGTAAATAAATTATGTCAAAAAGAAATAAGATCTTATTTTAAATATCTG
GCTATCATTATTTTATGCCAATGTGTCCTCATTATTTTTACAATTTCATT
ATGAAGAATAAGAGATGTACCTCAAACCAAACATTTCCATGATGAAGTCA
TCATACAAAAATATCAAAACTGTTATGAAAAGCGGGAAATGAAGTCTCTG
CACTTCTGCATCTTATAAGCCAAAGTAGCAGTCAGAGCAACAGTGAGTAC
AGTTATAAAACCCTCTCCAGGATCAAATACAGGAAGGCAAGGAGTGAAGA
CTGGGAATCAAAGATTAGGCTATATAGTGTAACTCAATGTACATGGTATT
AATCTACACCTTTATACAAAATGATGTAAATGGTTTTCAAAGAGTAAAAA
TTGTGCCTTTAGAAGAAAAGATTGATACAGTATCATAAATTACATTGGAT
TTGAATTGAATT

Query= MSMg01no059_o02.b1 MSMg01no059_o02.b1 CHROMAT_FILE:
MSMg01no059_o02.b1 PHD_FILE: MSMg01no059_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:29 2005
         (442 letters)



>mm_chr3_49583504_49584345
          Length = 842

 Score =  777 bits (402), Expect = 0.0
 Identities = 405/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaattggaaactgctcatttaattgttaatatgcaactgtctaatgatgaaagt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaattctaattggaaagtgctcatttaattgttaatatgcaactgtctaatgatgaaagt 347

                                                                       
Query: 65  gttcactgacttctatacatggcagcattctgggctttgcacagtgtgtgagtaactaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gttcactgacttctatacatggcagcattctgggctttgcacagtgtgtgagtaactaaa 287

                                                                       
Query: 125 caaagttcagggaagttttagaaaattcatctagaaatgcattatctcctctatgtattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 caaagttcagggaagttttagaaaattcatctagaaatgcattatctcctctatgtattg 227

                                                                       
Query: 185 ctggactctccttttttgaatattttattaggtattttctttatttacatttcaaatgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ctggactctccttttttgaatattttattaggtattttctttatttacatttcaaatgct 167

                                                                       
Query: 245 atcctcaaagccccctataccctctgtccaccctgctctccaacacacccactcctgctt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 atcctcaaagccccctataccctctgtccaccctgctctccaacacacccactcctgctt 107

                                                                       
Query: 305 cctggccctggcattctcctgtactggggcatatgatctttgcaagaccaagggcctctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 cctggccctggcattctcctgtactggggcatatgatctttgcaagaccaagggcctctc 47

                                                         
Query: 365 cttccattgatggctgactaggccatcctctgctacatatgcaact 410
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  cttccattgatggctgactaggccatcctctgctacatatgcaact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no059_o02.g1 MSMg01no059_o02.g1 CHROMAT_FILE:
MSMg01no059_o02.g1 PHD_FILE: MSMg01no059_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:29 2005
         (637 letters)



>mm_chr3_49437247_49438283
          Length = 1037

 Score = 1232 bits (637), Expect = 0.0
 Identities = 637/637 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaaagctctttatatgtaattttgaactgatgttgccaaaatgtaagtgtgctatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaaagctctttatatgtaattttgaactgatgttgccaaaatgtaagtgtgctatca 260

                                                                       
Query: 61  aattgtgtgaatatatagagatgatgcgaactttacctcaagccaaaaataagttgaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgtgtgaatatatagagatgatgcgaactttacctcaagccaaaaataagttgaatt 320

                                                                       
Query: 121 ttaagaatccaaactaaatattcctataactcacagtacaactacatgaagcactaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagaatccaaactaaatattcctataactcacagtacaactacatgaagcactaagta 380

                                                                       
Query: 181 aataaattatgtcaaaaagaaataagatcttattttaaatatctggctatcattatttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaattatgtcaaaaagaaataagatcttattttaaatatctggctatcattatttta 440

                                                                       
Query: 241 tgccaatgtgtcctcattatttttacaatttcattatgaagaataagagatgtacctcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccaatgtgtcctcattatttttacaatttcattatgaagaataagagatgtacctcaa 500

                                                                       
Query: 301 accaaacatttccatgatgaagtcatcatacaaaaatatcaaaactgttatgaaaagcgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accaaacatttccatgatgaagtcatcatacaaaaatatcaaaactgttatgaaaagcgg 560

                                                                       
Query: 361 gaaatgaagtctctgcacttctgcatcttataagccaaagtagcagtcagagcaacagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaatgaagtctctgcacttctgcatcttataagccaaagtagcagtcagagcaacagtg 620

                                                                       
Query: 421 agtacagttataaaaccctctccaggatcaaatacaggaaggcaaggagtgaagactggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtacagttataaaaccctctccaggatcaaatacaggaaggcaaggagtgaagactggg 680

                                                                       
Query: 481 aatcaaagattaggctatatagtgtaactcaatgtacatggtattaatctacacctttat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatcaaagattaggctatatagtgtaactcaatgtacatggtattaatctacacctttat 740

                                                                       
Query: 541 acaaaatgatgtaaatggttttcaaagagtaaaaattgtgcctttagaagaaaagattga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaaaatgatgtaaatggttttcaaagagtaaaaattgtgcctttagaagaaaagattga 800

                                                
Query: 601 tacagtatcataaattacattggatttgaattgaatt 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 801 tacagtatcataaattacattggatttgaattgaatt 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)