Query= MSMg01no060_a09.b1 MSMg01no060_a09.b1 CHROMAT_FILE:
MSMg01no060_a09.b1 PHD_FILE: MSMg01no060_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:40 2005
(464 letters)
>mm_chr3_55031163_55032026
Length = 864
Score = 797 bits (412), Expect = 0.0
Identities = 445/468 (95%), Gaps = 20/468 (4%)
Strand = Plus / Plus
Query: 8 ggaattccaaaatactcaccttaatgccagttaaaaggcctacctgttatttctaccaca 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 208 ggaattccaaaatactcaccttaatgccagttaaaaggcctacctgttatttctcccaca 267
Query: 68 gggcaagggaaaatgagctttgattgaattcctgtgtaccggctttgttaacctttactc 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gggcaagggaaaatgagctttgattgaattcctgtgtaccggctttgttaacctttactc 327
Query: 128 catcatggtaggggatttcatcagagatctccaggccacttctgctgagacaggggagga 187
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 328 catcatggtaggggatttcatcagagatctccaggccacttctgctgagacaagggagga 387
Query: 188 agcttacagacaccatggaagtggcttaagccgccttgagctcttcatgagcctgtgttt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agcttacagacaccatggaagtggcttaagccgccttgagctcttcatgagcctgtgttt 447
Query: 248 agtcctcagtctcactgcctctgttcctgccccaggagttaatcagccctgtaaccattt 307
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agtcctcagtgtcactgcctctgttcctgccccaggagttaatcagccctgtaaccattt 507
Query: 308 agtacacgtttgtaagggttgtgtttcccccagaattgatagccacgtgatagaacatgg 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agtacacgtttgtaagggttgtgtttcccccagaattgatagccacgtgatagaacatgg 567
Query: 368 tcgttccccccccctttttt-----------attgatctgatgctattaagtaagacatg 416
||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 568 tcgtt---------tttttttttttttttttattgatctgatgctattaagtaagacatg 618
Query: 417 ttattgtcatttactgcttaatttttattttagcatgctatgtgtgta 464
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttattgtcatttactgcttaatttttattttagcatgctatgtgtgta 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_a09.g1 MSMg01no060_a09.g1 CHROMAT_FILE:
MSMg01no060_a09.g1 PHD_FILE: MSMg01no060_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:40 2005
(305 letters)
>mm_chr3_55155667_55156371
Length = 705
Score = 472 bits (244), Expect = e-137
Identities = 285/308 (92%), Gaps = 19/308 (6%)
Strand = Plus / Minus
Query: 1 cagaaaattaggaagtccaaccacctctgctttcc-aatcctttttctttgtcatctgtg 59
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 647 cagaaaattaggaagtccaaccacctctgctttccaaatcctttttctttgtcatctgtg 588
Query: 60 ttctgccaccagaagcctttcgagt-cctggggggg-tggggggcgcatctgccagagag 117
||||||||||||||||||||||||| || ||||||| | ||||| |||||||
Sbjct: 587 ttctgccaccagaagcctttcgagtcccagggggggat---------atctggcagagag 537
Query: 118 gagggggttttgttgtgtgcctttctcgtttctattcactattcatagttcttttcttct 177
||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 536 gagggggttttgttgtgtgcctttctcgttt-------ctattcatagttcttttcttct 484
Query: 178 attttctagaattatcctgacccagctctcctccctccttagacttctctaacattctag 237
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 483 attttctagaattatcctgacccagctctcctccctccctagacttctctaacattcaag 424
Query: 238 ctttgccttcctctcctacctcccccattccctgtccctttggtttttacagctgcaagc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctttgccttcctctcctacctcccccattccctgtccctttggtttttacagctgcaagc 364
Query: 298 taccctaa 305
||||||||
Sbjct: 363 taccctaa 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
