Query= MSMg01no060_a17.b1 MSMg01no060_a17.b1 CHROMAT_FILE:
MSMg01no060_a17.b1 PHD_FILE: MSMg01no060_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:41 2005
(537 letters)
>mm_chr3_39701711_39702647
Length = 937
Score = 994 bits (514), Expect = 0.0
Identities = 526/530 (99%)
Strand = Plus / Minus
Query: 5 gaattcatttacacttatctttttactaagtgaactcttggttttcatttattcagacat 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gaattcatttacaattatctttttactaagtgaactcttggttttcatttattcagacat 675
Query: 65 tgccaatctctcccttttcttgaagttcaatctcaggtctaattaccactgcacactggc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgccaatctctcccttttcttgaagttcaatctcaggtctaattaccactgcacactggc 615
Query: 125 ctcaccaactccccttcttgaacataattactttgaccattgctataaagatatcattaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ctcaccaactccccttcttgaacataattactttgaccattgctataaagatatcattaa 555
Query: 185 gcaatgttgttctcttctgttacataccatgctgagcttgtgcctaatcctacctcctgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gcaatgttgttctcttctgttacataccatgctgagcttgtgcctaatcctacctcctgt 495
Query: 245 atcttctacactatgcactgaagtttttgatctttctgattaaagttcctttccctttct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 atcttctacactatgcactgaagtttttgatctttctgattaaagttcctttccctttct 435
Query: 305 cttgtagtagacatttcttcataaggaaatttgtgatgtgctgtttgaatgcatccatat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cttgtagtagacatttcttcataaggaaatttgtgatgtgctgtttgaatgcatccatat 375
Query: 365 ttgccccatagaaagatgctaaatcaggataagagataaagtgttagtgttattctggtg 424
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttgttgcatagaaagatgctaaatcaggataagagataaagtgttagtgttattctggtg 315
Query: 425 cctttgacatgttcatttcttggtcatgtggcaaatttttaacaagagccattttaatat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cctttgacatgttcatttcttggtcatgtggcaaatttttaacaagagccattttaatat 255
Query: 485 tcttttatattctcaggaccaagggagtgggtgggttgatagtggggggg 534
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcttttatattctcaggaccaagggagtgggtgggttgatagtggggggg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_a17.g1 MSMg01no060_a17.g1 CHROMAT_FILE:
MSMg01no060_a17.g1 PHD_FILE: MSMg01no060_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:41 2005
(631 letters)
>mm_chr3_39534254_39535284
Length = 1031
Score = 1149 bits (594), Expect = 0.0
Identities = 620/631 (98%), Gaps = 5/631 (0%)
Strand = Plus / Plus
Query: 1 catgtgagccttgcctactagatgagcctctgattcaaaaacaaacaaacaaacaaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 catgtgagccttgcctactagatgagcctctgattcaaaaacaaacaaacaaacaaacaa 264
Query: 61 acaaacagatgtgttttagttatatttctgtctcatgctatatcctataaaactataact 120
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aca----gatgtgttttagttatatttctgtctcatgctatatcctataaaactataact 320
Query: 121 acaatttattttatcttctaactatctagtatttgcagagaagattgagagcatcctaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaatttattttatcttctaactatctagtatttgcagagaagattgagagcatcctaca 380
Query: 181 tcctttcagttaattaagaagttaattatttctgaagatacattgttactgcatgagact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctttcagttaattaagaagttaattatttctgaagatacattgttactgcatgagact 440
Query: 241 tccagtgtctacaactgtcataatttagacagttgttgacagaactcactgagtggaact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagtgtctacaactgtcataatttagacagttgttgacagaactcactgagtggaact 500
Query: 301 ttgttcttctgtttacaaattcatatttttccctgncccatgatcaaataattcctacaa 360
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 501 ttgttcttctgcttacaaattcatatttttccctgttccatgatcaaataattcctacaa 560
Query: 361 tcattgacattaggcattaggaatagccatctttttgaatgaaccctaaattctttttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcattgacattaggcattaggaatagccatctttttgaatgaaccctaaattctttttct 620
Query: 421 tttatttttttttagcctacagcacccggtattcccaggcggtctcccatccaagtacta 480
||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 tttctttttttt-agcctacagcacccggtattcccaggcggcctcccatccaagtacta 679
Query: 481 accaggcccaaccctgcttagcttcctagatcagatgagattgggcgcgttcagggtggt 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 680 accaggcccaaccctgcttatcttcctagatcagatgagattgggcgcgttcagggtggt 739
Query: 541 atggccatagatgaaccctaaattcttaaccattgtaaatgtggtattttctatgcttca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atggccatagatgaaccctaaattcttaaccattgtaaatgtggtattttctatgcttca 799
Query: 601 acaagagaattgtgtatgtggtatgttttat 631
|||||||||||||||||||||||||||||||
Sbjct: 800 acaagagaattgtgtatgtggtatgttttat 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
