Query= MSMg01no060_a21.b1 MSMg01no060_a21.b1 CHROMAT_FILE:
MSMg01no060_a21.b1 PHD_FILE: MSMg01no060_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:42 2005
(374 letters)
>mm_chr3_100135443_100136221
Length = 779
Score = 675 bits (349), Expect = 0.0
Identities = 364/371 (98%), Gaps = 5/371 (1%)
Strand = Plus / Plus
Query: 7 ggaattcaggcagcacggaaggttggtgtcattcagtacatggccttcatgacatcattt 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcaggcagcatggaaggttggtgtcattcagtacatggccttcatgacatcattt 266
Query: 67 ttggcctctctgtgccttttcttatttctgtttgttt----ttaatttctagatgtttct 122
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 267 ttggcctctctgtgccttttcttatttctgtttgtttgtttttaatttctagatgtttct 326
Query: 123 tgtttttaatttctttcccttttcaatattccagacatttaaaagcaactaaataagtgt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgtttttaatttctttcccttttcaatattccagacatttaaaagcaactaaataagtgt 386
Query: 183 ctttaaatgtgtagagttaatattaatatcatgatatacagtggtcttttctatttgttt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctttaaatgtgtagagttaatattaatatcatgatatacagtggtcttttctatttgttt 446
Query: 243 gttaagcta-taatgttaaaaacctaaacctagaaagttacagacaatgtggattaaatg 301
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gttaagcaaataatgttaaaaacctaaacctagaaagttacagacaatgtggattaaatg 506
Query: 302 ctataagcttcatccccattgagggttcaatttaccatgaagatggcagagacttgagtc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctataagcttcatccccattgagggttcaatttaccatgaagatggcagagacttgagtc 566
Query: 362 tttaaaaactg 372
|||||||||||
Sbjct: 567 tttaaaaactg 577
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 779
Length adjustment: 9
Effective length of query: 365
Effective length of database: 770
Effective search space: 281050
Effective search space used: 281050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_a21.g1 MSMg01no060_a21.g1 CHROMAT_FILE:
MSMg01no060_a21.g1 PHD_FILE: MSMg01no060_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:42 2005
(623 letters)
>mm_chr3_100274218_100275240
Length = 1023
Score = 1151 bits (595), Expect = 0.0
Identities = 616/623 (98%)
Strand = Plus / Minus
Query: 1 cacttcctctctccaagttgcagggggagtaggggtttagtgtcaggtctggccctgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 cacttcctctctccaagttgcagggggagtaggggtttagtgtcaggtctggccctgtgc 764
Query: 61 agagggctgagtccagagagtcaagagtgatcttccttattctgtagacttaagcattac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 agagggctgagtccagagagtcaagagtgatcttccttattctgtagacttaagcattac 704
Query: 121 atttctattctgcactttggaaggaaaacagtgttaattgctggcccaaagcaagcagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 atttctattctgcactttggaaggaaaacagtgttaattgctggcccaaagcaagcagtc 644
Query: 181 cacagggagggatgtaggtgactgtggctttacctagtgggttcagaagagagagttccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 cacagggagggatgtaggtgactgtggctttacctagtgggttcagaagagagagttccc 584
Query: 241 ctttttgaaattttctgtgggatattttagaatgcatcgctttaggatatccaggggaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctttttgaaattttctgtgggatattttagaatgcatcgctttaggatatccaggggaag 524
Query: 301 agatgctcagtgtagccagcaagcttgatttctgacccgactccatcacattcaccatct 360
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 523 agatgctcagtgtagccagcaagcttgatttctgaagtgactccatcacatccaccatct 464
Query: 361 caattgctactttgttcagtgaccgtaaaaatccagagatccgagctaccgctttgtgtc 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 463 caattgctactttgttcagtgaccgtaaaaatccaaagatccgagctaccgctttgtgtc 404
Query: 421 cgctttaagcaatctaggtttccttatgcaaaagaggcgtagtaacaaaaatgaagtggc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 403 cgctttaagcaatctaggtttccttatgcaaaagaggcgtagtaacaaaaatgaaatggc 344
Query: 481 tggctttttcctagtgctgtgttttcaagttgcttctggaatgtgctgctttggtctccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tggctttttcctagtgctgtgttttcaagttgcttctggaatgtgctgctttggtctccc 284
Query: 541 aggagttgatccaaatgcatcttcacggtatccatgttaagttaggtcaccaggagactt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aggagttgatccaaatgcatcttcacggtatccatgttaagttaggtcaccaggagactt 224
Query: 601 agtatagctactttctactgccc 623
||| |||||||||||||||||||
Sbjct: 223 agtgtagctactttctactgccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
