BAC Information

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BAC

Clone NameMSMg01-060B24
Chromosome3 (Build37)
Map Location 86,626,781 - 86,627,294
singlet/doubletsinglet
Overlap geneDclk2
Upstream geneGlt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319
Downstream geneEG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060B24.T7 (MSMg01no060_b24.b1)MSMg01-060B24.TJ (MSMg01no060_b24.g1)
ACCAG286643AG286644
length758684
length of high quality
(start - end)
284 (78 - 361)531 (72 - 602)
definitionCHROMAT_FILE: MSMg01no060_b24.b1 PHD_FILE: MSMg01no060_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:47 2005CHROMAT_FILE: MSMg01no060_b24.g1 PHD_FILE: MSMg01no060_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAGAAGC
CGCGGAATTCTACTATTTTCCGAAGCAAGACAAGGTTGTCCACTCTCCCC
ATACCTATTCAACATAGCACATGAAGTCTTAGCTACAACATTAAGACAAC
TGAAGATCAGGGCTACAAATAGGAAAGCAAGAAGTAATACTATCTATATT
TACGGATTATGTGACAGAAGTCTGTTTTGTTAGAAATTAGAATAGCTACA
CCAGCTAGCTTCTTGGGTCCAAATCTTTTTCCAACCCTTTACTCTGAGGC
AACATCTATCTTTGATGTTGAAGTATGTTTCTTGTGTACAGTAGCAGAAT
GATGTATCTTGTTTTTGCATTCATTCTGTTAACATACGTCTTTTAGTTGG
GGGAGTTTAGACCATTTATATTGAGCGATATTAATGACCAGTGATTGGTA
ATTCCTCTTATTTTGTTGGTGAAGGTGGAGATGGAGACTTTTTCGCCTCA
AACACGTGTGTTTACATGCTAACGACGAACTCCCAATATTAACACTTAAC
ACTTGGTATACAATCCGGTAAAAAATATCTCACCGCGAAACGCCATATAC
GTTAAACCCGCGTAAAACAGTACAACACCGGACCTCCCAACACGTTAACC
GGGGTGCACAATTTGTGTAAAACCCCAAAAAATGCGGGATAACCGGGATA
ACAAAATGGTATAAAATGGGTCAAATATGTGCCTAAAACGCGAAATTTCG
CGCCCATG
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGCCAGCTAAAGAAGGATGAAGAAACC
AAGAACACCAGAAGACTAAGCATCCTTATAACCATTCATGAACGGGCCTC
ACTGCAAAGTCCTATGGTACCGAGACTAGAAAACAGGAACTTGCAGTAAA
GAAGACTTCTGTCTGACCTGCTTCTCCCTGAGGCAACTATCACCAAAAGC
GGTCGTGCTTTTCAGAAAAGCCATCTTTCCCAAATCCAAACAAAGGGGAG
CCAAGTTTTAATACCTAGGGACTCCATTTTAGACTAGCAGCCCAACAGGG
GTCTGCTAGGTAGCCTGCACGTTAATAATTCCGTTTATAAATTTTTGTTC
TGACACTGCTGTTTTGAGCCATCTGTTAAGACTACTTCTGCTTTCAAATT
CCAGCTACTCCCCAGGCTACAGGGGCAGCTTCTACCACAGGCCCATGTAC
ACCATCCTCTTATACTGAGACATTATGGTTTGGGTATAAAAGCCTAAAGT
TTGGGGTTTTTTTGTTTCGTTTTTTGTTTTTGTTTTTGTTTTGTTTTAAT
TGGGGGGTTGAGTCGGACGTTCAAGGAGCCCCGGCTGGCCCTGAACTTGA
TACTTGAACTTCTGCTCCCCCTGGCCTCCCTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_b24.g1 MSMg01no060_b24.g1 CHROMAT_FILE:
MSMg01no060_b24.g1 PHD_FILE: MSMg01no060_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:47 2005
         (531 letters)



>mm_chr3_86626581_86627510
          Length = 930

 Score =  905 bits (468), Expect = 0.0
 Identities = 504/516 (97%), Gaps = 3/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgccagctaaagaaggatgaagaaa-ccaagaacaccagaagactaagcatccttata 59
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tttgccagctaaagaaggatgaagaaaaccaagaacaccagaagactaagcatccttata 260

                                                                       
Query: 60  accattcatgaacgggcctcactgcaaagtcctatggtaccgagactagaaaacaggaac 119
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 261 accattcatgaacgggcctcactgcaaagtcctatggtaccgagaccagaaagcaggagc 320

                                                                       
Query: 120 ttgcagtaaagaagacttctgtctgacctgcttctccctgaggcaactatcaccaaaagc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcagtaaagaagacttctgtctgacctgcttctccctgaggcaactatcaccaaaagc 380

                                                                       
Query: 180 ggtcgtgcttttcagaaaagccatctttcccaaatccaaacaaaggggagccaagtttta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtcgtgcttttcagaaaagccatctttcccaaatccaaacaaaggggagccaagtttta 440

                                                                       
Query: 240 atacctagggactccattttagactagcagcccaacaggggtctgctaggtagcctgcac 299
           ||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 441 atacctaggaactccattttaga-t-gcagcccaacaggggtctgctaggtagcctgcac 498

                                                                       
Query: 300 gttaataattccgtttataaatttttgttctgacactgctgttttgagccatctgttaag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gttaataattccgtttataaatttttgttctgacactgctgttttgagccatctgttaag 558

                                                                       
Query: 360 actacttctgctttcaaattccagctactccccaggctacaggggcagcttctaccacag 419
           |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 559 actagttctgctttcaaatcccagctactccccaggctacagggacagcttctaccacag 618

                                                                       
Query: 420 gcccatgtacaccatcctcttatactgagacattatggtttgggtataaaagcctaaagt 479
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gtccatgtacaccatcctcttatactgagacattatggtttgggtataaaagcctaaagt 678

                                               
Query: 480 ttggggtttttttgtttcgttttttgtttttgtttt 515
           ||||| ||||||||||||||||||||||||||||||
Sbjct: 679 ttgggttttttttgtttcgttttttgtttttgtttt 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 930
Length adjustment: 10
Effective length of query: 521
Effective length of database: 920
Effective search space:   479320
Effective search space used:   479320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)