BAC Information

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BAC

Clone NameMSMg01-060C13
Chromosome3 (Build37)
Map Location 94,422,344 - 94,422,937
singlet/doubletsinglet
Overlap geneTuft1
Upstream geneEG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409
Downstream geneLOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060C13.T7 (MSMg01no060_c13.b1)MSMg01-060C13.TJ (MSMg01no060_c13.g1)
ACCAG286668AG286669
length702784
length of high quality
(start - end)
657 (46 - 702)63 (73 - 135)
definitionCHROMAT_FILE: MSMg01no060_c13.b1 PHD_FILE: MSMg01no060_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:50 2005CHROMAT_FILE: MSMg01no060_c13.g1 PHD_FILE: MSMg01no060_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTACGAATTAAGGACAGGAAAAAAAAAAAAAAGCCAGGTGT
GGTGGTGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGAT
TTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCA
GGGATATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAA
AAAGAATTAAGGACAGAAGGGCTGAAGAGATGGTTCAAAAGTTAAGAGCA
TTGGCTGCACTTCTAGAAGACCTAAGTTCAATTCCCAGCAATCATATGGC
AGCTCACAATTGTCTGTAACTCTAGTTCCAGGGGATCCAACAAACACACA
TATAGGCAAAACATCCCCGCACATAGAATAAAAATAATTTAAAAAAAGAC
AGAGAACAGATATTTCTTATTGGGGATCTTGGCTTTGTTTGCTTCCTACT
TAAATCTTTGAAGTAATCAGAAACTTATAACTCACAAGGCAGCCAACTTC
CTCCTTTAAAGAAAAAGTTTTATTTATTTTATGGATATGAGTGCTCTATC
TGTATGCATACCTACATACAAGGAGAGGGCATCAGTGTCCTGACCAGCAG
GACCCAGTTATTCGTGGGTACGAAGGGAACTACAAACCTGCAAGAGAAAC
GG
AATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATCTTAGCCTTTCTGTCAGGAGAGAGCCAC
ACAGCCTGCAAGCCACATATATATGTGTGTGTGTGTATGTGTGTGTGTGT
GTGTGTGNNNNNNNNNNNNNNNNNNNTNTTTTTTTTTCCCTTTTTTTTTT
TTCTTTTTTTNCCCCNTTNCCNCCTTTTTNTNNNTCCNNNTCCCCCCCCC
TCCCCCCCCCTCCCCTCCCCCCCCTTNTTTTCNCCCTCCTCCCCCCCCCN
TTCCTCCCCTTCTCCCCCCTATCACCCCCCCTCCCTTTCCCTCCTCCCCC
CCCCCCCACCCCCACCACCCACCCCCCCCCAACAAAAAAAAAAAACAAAT
AAAAAAAAACCCAACCTTCCCCCAAAAAAAAANAAAAAAATAATAAAACA
CCCACACCCAAAAAACAAACCACCAAAAACAAAAAAAACAAAAACAAACA
AAACACACACAAAAAAAAACACCCAAACCCCCCCACAACACAACAACACC
ACCCCCCCCACAAAAACACAAACACTACACCCACAAAAACCACAAACAAA
AACAAACACCCAAAACCCACACAAACCCAACACCACACAAAACCACCCCC
CACCACACCAAAACACCCCCCACCAAAACACACCAACAACACAACAACCC
CACAACACAAACCACACAAAACAAAACCAAAAAAACCAACAACAAACAAC
AAAAACCCCACACACAAACAACAACACTAAACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_c13.b1 MSMg01no060_c13.b1 CHROMAT_FILE:
MSMg01no060_c13.b1 PHD_FILE: MSMg01no060_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:50 2005
         (657 letters)



>mm_chr3_94421881_94422937
          Length = 1057

 Score = 1064 bits (550), Expect = 0.0
 Identities = 581/594 (97%), Gaps = 5/594 (0%)
 Strand = Plus / Minus

                                                                        
Query: 69   tttaatcccagcactcaggaggcagaggcaggcagatttctgagttcgaggccagcctgg 128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tttaatcccagcactcaggaggcagaggcaggcagatttctgagttcgaggccagcctgg 998

                                                                        
Query: 129  tctacaaagtgagttccaggacagccagggatatacagagaaaccctgtctcgaaaaacc 188
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 997  tctacaaagtgagttccaggtcagccagggatatacagagaaaccctgtctcgaaaaacc 938

                                                                        
Query: 189  -----aaaaaaaaaaaaaaaaaaaagaattaaggacagaagggctgaagagatggttcaa 243
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937  aaaaaaaaaaaaaaaaaaaaaaaaagaattaaggacagaagggctgaagagatggttcaa 878

                                                                        
Query: 244  aagttaagagcattggctgcacttctagaagacctaagttcaattcccagcaatcatatg 303
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 877  aagttaagagcattggctacacttctagaagacctaagttcaattcccagcaatcatgtg 818

                                                                        
Query: 304  gcagctcacaattgtctgtaactctagttccaggggatccaacaaacacacatataggca 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  gcagctcacaattgtctgtaactctagttccaggggatccaacaaacacacatataggca 758

                                                                        
Query: 364  aaacatccccgcacatagaataaaaataatttaaaaaaagacagagaacagatatttctt 423
            |||||||   ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 757  aaacatcaatgcacatagaataaaaataatttaaaaaaagacagaaaacagatatttctt 698

                                                                        
Query: 424  attggggatcttggctttgtttgcttcctacttaaatctttgaagtaatcagaaacttat 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  attggggatcttggctttgtttgcttcctacttaaatctttgaagtaatcagaaacttat 638

                                                                        
Query: 484  aactcacaaggcagccaacttcctcctttaaagaaaaagttttatttattttatggatat 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637  aactcacaaggcagccaacttcctcctttaaagaaaaagttttatttattttatggatat 578

                                                                        
Query: 544  gagtgctctatctgtatgcatacctacatacaaggagagggcatcagtgtcctgaccagc 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577  gagtgctctatctgtatgcatacctacatacaaggagagggcatcagtgtcctgaccagc 518

                                                                  
Query: 604  aggacccagttattcgtgggtacgaagggaactacaaacctgcaagagaaacgg 657
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 517  aggacccagttattcgtgggtacgaagggaaccacaaacctgcaagagaaacgg 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)