Query= MSMg01no061_d03.b1 MSMg01no061_d03.b1 CHROMAT_FILE:
MSMg01no061_d03.b1 PHD_FILE: MSMg01no061_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:06 2005
(341 letters)
>mm_chr3_57261526_57262264
Length = 739
Score = 609 bits (315), Expect = e-179
Identities = 334/341 (97%), Gaps = 2/341 (0%)
Strand = Plus / Plus
Query: 1 ctcatgtcctgacgagggcctttctgtatgtgttaatcagagatcggcttcattcttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatgtcctgacgagggcctttctgtatgtgttaatcagagatcggcttcattcttcaa 260
Query: 61 ccagtttcatagacaggattattttaaacacttgaaatcttgaaagcagaattaataatg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtttcatagacaggattattttaaacacttgaaatcttgaaagcagaattaataatg 320
Query: 121 cctcagaatacaaaacgcagcacacaaaattcatggttcatcaggctgcgacctagttgg 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcagaatacaaaac--agcacacaaaattcatggttcatcaggctgcgacctagttgg 378
Query: 181 cctgatgttttcagaatcaggtccaaaagacgaaaatatagttgccactgatttatcaaa 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 379 cctgatgttttcagaatcaggtccaaaagataaaaatatagttgccactgatttatcaaa 438
Query: 241 aacatttggttaccctctgtaatagctacaaaattacagagtttatatatatatatatat 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aacatttggctaccctctgtaatagctacaaaattacagagtttatatatatatatatat 498
Query: 301 atatatatatatatatatatatatataaaacaaacatcaaa 341
||||||||||||||||||||||||||| |||||||||||||
Sbjct: 499 atatatatatatatatatatatatatataacaaacatcaaa 539
Score = 89.7 bits (46), Expect = 2e-22
Identities = 49/50 (98%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 283 ttatatatatatatatatatatatatatatatatatatatatata-aaac 331
||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 528 ttatatatatatatatatatatatatatatatatatatatatatataaac 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 7
Length of query: 341
Length of database: 739
Length adjustment: 9
Effective length of query: 332
Effective length of database: 730
Effective search space: 242360
Effective search space used: 242360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_d03.g1 MSMg01no061_d03.g1 CHROMAT_FILE:
MSMg01no061_d03.g1 PHD_FILE: MSMg01no061_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:06 2005
(335 letters)
>mm_chr3_57391776_57392510
Length = 735
Score = 609 bits (315), Expect = e-179
Identities = 330/335 (98%)
Strand = Plus / Minus
Query: 1 catccaagtgtggtgacacactcctgcaatcccattactctgcatgcaggtgggagcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 catccaagtgtggtgacacactcctgcaatcccattactctgcatgcaggtgggagcagc 476
Query: 61 gggacacacaggaaagatagattttgtataagaatcttgtgaaaacattagggcccagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gggacacacaggaaagatagattttgtataagaatcttgtgaaaacattagggcccagaa 416
Query: 121 gtttgcctcagcctgtaaaagcacttagcatgaaggactgacaacctgaatctgacccct 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gtttgcctcagtctgtaaaagcacttagcatgaaggactgacaacctgaatctgacccct 356
Query: 181 gaattccacagcagtaggaagaaaacagacaacttaaaggtgtcctctaattccatatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gaattccacagcagtaggaagaaaacagacaacttaaaggtgtcctctaattccatatga 296
Query: 241 gtacaatggcacttagacaccatacctccaccaacacacatggggaaataataatagtat 300
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gtacaatggcactcagacaccatacctccaccaacacacatggggaaataataatagtag 236
Query: 301 tattattcttgttatttgtttgttagtttgagaca 335
||||||| |||||||||||||||| ||||||||||
Sbjct: 235 tattattattgttatttgtttgtttgtttgagaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space: 236676
Effective search space used: 236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
