BAC Information

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BAC

Clone NameMSMg01-061E17
Chromosome3 (Build37)
Map Location 10,213,487 - 10,214,104
singlet/doubletsinglet
Overlap genenone
Upstream geneZbtb10, Zfp704, Pag1, LOC621504, Fabp5, LOC100041480, Pmp2, Fabp9, Fabp4
Downstream gene1700008G05Rik, Impa1, Slc10a5, Zfand1, Chmp4c, Snx16, LOC670564, LOC383826, EG667978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061E17.T7 (MSMg01no061_e17.b1)MSMg01-061E17.TJ (MSMg01no061_e17.g1)
ACCAG287537AG287538
length713712
length of high quality
(start - end)
623 (44 - 666)573 (74 - 646)
definitionCHROMAT_FILE: MSMg01no061_e17.b1 PHD_FILE: MSMg01no061_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:13 2005CHROMAT_FILE: MSMg01no061_e17.g1 PHD_FILE: MSMg01no061_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCCCAGCAGGTAACCAGGTAGCTGGAGAATCGCACAGAGCCATGCGGAT
TCTTGGCAAGCCATGCGACAAAGGCAGAAATGCACATTTCACCCAGAGAG
AAGGGATTGTAGTCAGCAGGAAGTCACCACCCCGAGAGCAAATGGAGTTC
CCAGATGCCTGACATTTGCCTTCTCACTGGATCAGAGTTCACTAGTGGAA
GTGTCACAGCCCAAACTCTCCCCCAAAGGCTCAGCCCTTCCTTGCCTTGT
AACAATCAAGCCGCTCCTGGATGAACTGCTCCGCCCTCTGTCTCTTTGGC
AGGGTTGGAGCCCACTGTGGCCTGAGCGACTTCTATGGCTCCCTTTCTGT
GATTTTCATGGTTTCTGACCCCCTTTCCCCTGCTTTATGATTTTCTCTTT
TTGTCTCTCTCTTGCTAAACCTCCTTCGTATATGCCCTCTCAGGTTTCAT
TTCTGAATCATCTACTGTGAACTATTCCCATTGTTTGCCAGAAGCCCCCT
GGTTCTTCCTTCTAGAAGTTCAGGCCAGGAGTCAGAACCATAACCACCCA
CCACAACTGTAATGGACAAAAAAATGAAGTGAAACCCTTGGTCTTTAAGT
CCAGTCCTAGGCTACACCCTGTAAGGCTGGCGATTATATACTTTTTACTT
ACTCAGTTCCCGT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAAGAATACTGAATGGCTGAG
AAGCTCCTGAAAAAATGTTTAGCATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAAAATGGCTAAGATCA
AAAATTTAGGTGACAGCAGATACTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTTCATTGCTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACGGGAGGATACCG
CAATACCTCTCCTGGGCATATATCCACAAGACGTTCCAACCGGTAAGAAG
GACACATGCTCCACTATCCCCACAGCAGCCTTATTTATAATAGCTAGAAG
CTCGAAAAAACCCAGATGCTCCTCAACATAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAAGTAAATGGCTGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACAATCACAAAAGAACTAANATGATATGTACTCATTGATAAGTG
GATTATTAGCCCAGATACTTAGTATACCCGAGATATAAGATACAATTCGC
AAAACACATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_e17.b1 MSMg01no061_e17.b1 CHROMAT_FILE:
MSMg01no061_e17.b1 PHD_FILE: MSMg01no061_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:13 2005
         (623 letters)



>mm_chr3_10213283_10214304
          Length = 1022

 Score = 1127 bits (583), Expect = 0.0
 Identities = 610/619 (98%), Gaps = 1/619 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccagcaggtaaccaggtagctggagaatcgcacagagccatgcggattcttggc 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gaattcccagcagg-aatcaggtagctggagaatcgcacagagccatgcggattcttggc 764

                                                                       
Query: 65  aagccatgcgacaaaggcagaaatgcacatttcacccagagagaagggattgtagtcagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 aagccatgcgacaaaggcagaaatgcacatttcacccagagagaagggattgtagtcagc 704

                                                                       
Query: 125 aggaagtcaccaccccgagagcaaatggagttcccagatgcctgacatttgccttctcac 184
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 703 aggaagtcaccacccagagagcaaatggagttcccagatgcctgacatttgccttcttac 644

                                                                       
Query: 185 tggatcagagttcactagtggaagtgtcacagcccaaactctcccccaaaggctcagccc 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 643 tggatcagagttcactagtggaagtgtcacagcccaaacactcccccaaaggctcagccc 584

                                                                       
Query: 245 ttccttgccttgtaacaatcaagccgctcctggatgaactgctccgccctctgtctcttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttccttgccttgtaacaatcaagccgctcctggatgaactgctccgccctctgtctcttt 524

                                                                       
Query: 305 ggcagggttggagcccactgtggcctgagcgacttctatggctccctttctgtgattttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggcagggttggagcccactgtggcctgagcgacttctatggctccctttctgtgattttc 464

                                                                       
Query: 365 atggtttctgaccccctttcccctgctttatgattttctctttttgtctctctcttgcta 424
           ||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 463 atggtttctgagctcttttcccccgctttatgattttctctttttgtctctctcttgcta 404

                                                                       
Query: 425 aacctccttcgtatatgccctctcaggtttcatttctgaatcatctactgtgaactattc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aacctccttcgtatatgccctctcaggtttcatttctgaatcatctactgtgaactattc 344

                                                                       
Query: 485 ccattgtttgccagaagccccctggttcttccttctagaagttcaggccaggagtcagaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ccattgtttgccagaagccccctggttcttccttctagaagttcaggccaggagtcagaa 284

                                                                       
Query: 545 ccataaccacccaccacaactgtaatggacaaaaaaatgaagtgaaacccttggtcttta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ccataaccacccaccacaactgtaatggacaaaaaaatgaagtgaaacccttggtcttta 224

                              
Query: 605 agtccagtcctaggctaca 623
           |||||||||||||||||||
Sbjct: 223 agtccagtcctaggctaca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1022
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1012
Effective search space:   620356
Effective search space used:   620356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)