Query= MSMg01no061_i17.b1 MSMg01no061_i17.b1 CHROMAT_FILE:
MSMg01no061_i17.b1 PHD_FILE: MSMg01no061_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:33 2005
(558 letters)
>mm_chr3_8153431_8154388
Length = 958
Score = 758 bits (392), Expect = 0.0
Identities = 475/520 (91%), Gaps = 30/520 (5%)
Strand = Plus / Minus
Query: 1 tggctgttatgactatcataattgctaaatagtgccctaacatttatcattttcttgctg 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tggctgttatgactaccataattgctaaatagtgccctaacatttatcattttcttgctg 475
Query: 61 tgtgtttgcctcaaaaacaaatattctacttttattccaccttaaaatgtagggcactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tgtgtttgcctcaaaaacaaatattctacttttattccaccttaaaatgtagggcactgt 415
Query: 121 gttactgcattggacacagttactgagttaaagaatattattgttgctactctaaaaagg 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gttactacattggacacagttactgagttaaagaatattattgttgctactctaaaaagg 355
Query: 181 gaaagctggaagcagagagcttttgaaatgacatacagctgaaaaatgagcagccgggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaaagctggaagcagagagcttttgaaatgacatacagctgaaaaatgagcagccgggat 295
Query: 241 ttgaaaataacacctgtgagtttgaacttgacaccatgttgtcaaacgtttaaatataac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttgaaaataacacctgtgagtttgaacttgacaccatgttgtcaaacgtttaaatataac 235
Query: 301 atcctttatttcagaatattttcacaagttgaaaatctatct--at-ctt---------- 347
|||||||||||||||||||||||||||||||||||||| ||| || | |
Sbjct: 234 atcctttatttcagaatattttcacaagttgaaaatctgtctttatacatatatatatat 175
Query: 348 ---------------tacacacacacacatatatatataca--tatagacttatatattt 390
|| | | | | | ||||||||||||| |||| ||||||||||||
Sbjct: 174 atatatatatatatatatatatatatatatatatatatacacttatatacttatatattt 115
Query: 391 gcaatttctacatctgtggacgttaataactccagtagcttccactcaccaaacaggaga 450
| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 114 ggaatttctacatctgtgggcgttaataactccagtagtttccactcaccaaacaggaga 55
Query: 451 gaatgctgatgattcagctcaatgccctgaagtcagcagc 490
||||||||| ||||||||||||||||||||||||||||||
Sbjct: 54 gaatgctgacgattcagctcaatgccctgaagtcagcagc 15
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_i17.g1 MSMg01no061_i17.g1 CHROMAT_FILE:
MSMg01no061_i17.g1 PHD_FILE: MSMg01no061_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:33 2005
(305 letters)
>mm_chr3_8011584_8012288
Length = 705
Score = 567 bits (293), Expect = e-166
Identities = 302/305 (99%)
Strand = Plus / Plus
Query: 1 cacagagtggtaacaccagctctgaagcaaataaagcaacagagttctctctatccatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagagtggtaacaccagctctgaagcaaataaagcaacagagttctctctatccatca 260
Query: 61 tcctacaggttatatcacaggtagtttgtcacaggtttgatggtacatgtgctaagagat 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctacaggttacatcacaggtagtttgtcacaggtttgatggtacatgtgctaagagat 320
Query: 121 actctgagactgggtagagggtatattttggaatgctctgaaacttttctcatttggctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actctgagactgggtagagggtatattttggaatgctctgaaacttttctcatttggctc 380
Query: 181 agccaactccatttggaaatctacacgagagtagagaaatggggcaaaggcaacagtttc 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 agccaactccatttggaaatctacacaagagtagagaaatggggcaaaggcaacagtttc 440
Query: 241 actgccaactgtctaattgctcttttccatagtcttcagttctgtgaaaatgatcatttt 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgccaactgtctaattgcgcttttccatagtcttcagttctgtgaaaatgatcatttt 500
Query: 301 gatag 305
|||||
Sbjct: 501 gatag 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
