Query= MSMg01no062_c12.b1 MSMg01no062_c12.b1 CHROMAT_FILE:
MSMg01no062_c12.b1 PHD_FILE: MSMg01no062_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:27 2005
(707 letters)
>mm_chr3_107073786_107074892
Length = 1107
Score = 913 bits (472), Expect = 0.0
Identities = 487/492 (98%)
Strand = Plus / Minus
Query: 216 ataacaagacatgcacaggggaaaggcaggctccagctgcaaacatctgtctataggcca 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 ataacaagacatgcacaggggaaaggcaggctccagctgcaaacatctgtctataggcca 1048
Query: 276 aggagagaagcctcgaacatatttcttcctcacagtcctcatatttaaactattctgcca 335
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 1047 aggagagaagcctcgaacatatttcttcctcacagtcctcagaaggaaactattctgcca 988
Query: 336 aaactttgatttggggcttctattctccagacttgagggtaaaccactcaattggtgatt 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 aaactttgatttggggcttctattctccagacttgagggtaaaccactcaattggtgatt 928
Query: 396 cattataatggtatccctggggaatgagggccttcatgaatccagaaagcccacaagtca 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 cattataatggtatccctggggaatgagggccttcatgaatccagaaagcccacaagtca 868
Query: 456 agcaggatcatagatacttggtgactctttgttaacagaagtactagttggaacgattac 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 agcaggatcatagatacttggtgactctttgttaacagaagtactagttggaacgattac 808
Query: 516 cctcccagaggcaaaaagagaacagatgagctttccagcttgctcccagtattgttctgt 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 cctcccagaggcaaaaagagaacagatgagctttccagcttgctcccagtattgttctgt 748
Query: 576 ggctaagatagttttcttccattggaccttggccaacctatttaacttgggctttggatc 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ggctaagatagttttcttccattggaccttggccaacctatttaacttgggctttggatc 688
Query: 636 ttcctttaaagcttttatagacatatgtgccatgtacttatgtcttatgtgttggtgtgt 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttcctttaaagcttttatagacatatgtgccatgtacttatgtcttatgtgttggtgtgt 628
Query: 696 gtgtgtgtgtgt 707
| ||||||||||
Sbjct: 627 gagtgtgtgtgt 616
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_c12.g1 MSMg01no062_c12.g1 CHROMAT_FILE:
MSMg01no062_c12.g1 PHD_FILE: MSMg01no062_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:27 2005
(668 letters)
>mm_chr3_106958173_106959240
Length = 1068
Score = 1226 bits (634), Expect = 0.0
Identities = 661/672 (98%), Gaps = 6/672 (0%)
Strand = Plus / Plus
Query: 1 ctccttcctgcccatgggtccaatataaagcattgtcctttcaaggtagaattacagccc 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ctccttcctggacatgggtccaatataaagcattgtcctttcaaggtagaattacagccc 254
Query: 61 ccccc---agactttttgtggtctctagggaaacagtactgccccatccagaaccaacag 117
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ccccccccagactttttgtggtctctagggaaacagtactgccccatccagaaccaacag 314
Query: 118 caagggttctgtagagcaaggaccaagcttctatcttcctctcttaaccaattccctctg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caagggttctgtagagcaaggaccaagcttctatcttcctctcttaaccaattccctctg 374
Query: 178 ccatggcactagagcatccctatcat-gacttcagtagggaatgccctccactagctcat 236
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 375 ccatggcactagagcatccctatcattgacttcagtagggaatgccctccactagctcat 434
Query: 237 ggctgaaaacatgcttatctggtaagactattttgggatgctatttctggaaactttagg 296
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 435 ggctgaaaacatgcttatctggtaagactattttgggatgctagttctggaaactttagg 494
Query: 297 aggtggggtttcattagcagaagtagatctgaggggatgtagctctgaaggttacgcctc 356
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 495 aggtggggtttcactagcagaagtagatctgaggggatgtagctctgaaggttactcctc 554
Query: 357 tc--agtgtcctccttgctccctgattcccgtccaccagaaaagaaaagcccctttcttc 414
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tctcagtgtcctccttgctccctgattcccgtccaccagaaaagaaaagcccctttcttc 614
Query: 415 acactctgttatgttctgactcacagtgaccaagaaacagaggtccaaatgactgtgaac 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 acactctgttatgttctgactcacagtgaccaagaaacagaggtccaaatgactgtgaac 674
Query: 475 caaactctctaaaaccatgacccaaaataaaaatgtcctcttttaacttgattatgtcga 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 caaactctctaaaaccatgacccaaaataaaaatgtcctcttttaacttgattatgtcga 734
Query: 535 gaatttcatcacagtggtgggggacaattgactagtgtggtcccttgctgacagacccca 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gaatttcatcacagtggtgggggacaattgactagtgtggtcccttgctgacagacccca 794
Query: 595 gctctctcaccaaagtggctgtcaacaaactatttctgcctatcaactacctgcttgctt 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gctctctcaccaaagtggctgtcaacaaactatttctgcctatcaactacctgcttgctt 854
Query: 655 atcacaccaaca 666
||||||||||||
Sbjct: 855 atcacaccaaca 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
