BAC Information

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BAC

Clone NameMSMg01-062D17
Chromosome3 (Build37)
Map Location 133,885,020 - 134,033,856
singlet/doubletdoublet
Overlap geneLOC100039199, Cxxc4, Ppia-ps3_1390.1
Upstream gene9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168, LOC668862
Downstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062D17.T7 (MSMg01no062_d17.b1)MSMg01-062D17.TJ (MSMg01no062_d17.g1)
ACCAG288254AG288255
length1,1721,172
length of high quality
(start - end)		309 (452 - 760)720 (130 - 849)
definitionCHROMAT_FILE: MSMg01no062_d17.b1 PHD_FILE: MSMg01no062_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:36 2005CHROMAT_FILE: MSMg01no062_d17.g1 PHD_FILE: MSMg01no062_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,033,560 - 134,033,856)(133,885,020 - 133,885,739)
sequence
CGTCCCTGGGNNANACCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCATGAGNNNCNTTTCATTGAGNGAGCCNCNNGGNNAGA
NANGANNAANGNNNNCTCTTTAAAACAANAGAAGNCCANNGNNNNANAAA
GNNNCNAGGNGANNANGANAANCNNCAGGGNNCCAAANACCANACACAGG
ANGGCAAANAACNNNCAGAANCCCNNNNNCACAAAANCNGAGNNAGCNGG
CCCAGNNGNNCNNGAGCCNACCNACANNNCNNAAGGNNNCAAAGGCNGNA
NNNAACNGGNCNCCCNNNGNNCNCCNCNNNATCACCANNCNGAAGNCCGA
ANNCNAGANCNCAAGAANCCANNGGNCCNNNAGCAGCANAGGAANNNGAT
TTTTTTTATAACAANNGCAAGNCCANAGNTCCTGAAAGAAGAANNCCCTC
CTCTCTTGATTCCATTTATTGACAGCAGGTATTATAGTATTGATGTATAA
GCCCAACCAGCTTGGTTCTGACATCAGCTGTTTCAGTGACTGGGTCAGTA
GGTCTTCATCATTCTAATCTTTGTCTCATACTAACAACACTCCATTTCAT
TTCATCCAATAGAGGGTTTTCATATTAAAACTTTTGGAAATCAAGATGCA
GCAAACAGGGATGATGCTGAATCTTGACACCAACCTGCCAGTGGTGTCAA
CATTCTAATGTATCTTATATAGCTCAGACATGTGAAAACAAACATACACA
GACTGAACCACTTCACTCTTAGGGGACTGCCCTTGAGTCGTTTACATTAT
ATAACCACAAGTCTGCAAAATGATCTAACCCTAACTTGAACTCTAAATCT
TATTTTTAACATCCTCAGAATAATAACCCATTAATTCCGCACTAAAACAA
AGCCTGCCAGTGCAGGAGGAACAGTGTGACTAACACATGCCAGGCAAGGG
AAACTATTGCAAGAACAAATGGGAAGAAATATTAACGAACCCCGTGTGGA
TGTCCAAGAAGAAATGGGCCCTTGGGGACTGAATTACCCATTGGGAAAAA
ACCTCCCCGGCCCTTAAGAACCAATGGGGTCCACATGGCCTGCTAAAATT
TTTCCCAAAGGGCCAAAATTTCCAGAAAAAAATGGGCTTAAAATTTTCGG
AAAACACTTGGATTTAAGGGGT

NCCTGACATNNNNNACCCATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTATAAAGCGTTAATGAGGA
ACAAGGACTCAAGTTTCCCCTTGAACTCTTAAGAGAGCAACTGGGCATGT
AATGTCCAAGAATGAAGAGCATCTCAGCCAGTGTAAGAAGATGAAGGGGA
CCTCCATAGACCCTGAGGAGGAAAGAGTTGATTTTGATAATAATGGCTAT
CTACTCTCAGGAACTAGAGGCACATGGGAGATGGCCATTAGGTGGCATGG
ATATAGAGCCACATGAAAGCTAGAATGTGGAAATAAACGAGGTCCTGAGA
GTCCAGAGTTTCTGGTTGTCACTTACAAGAATGGTGAAACAGTGCAGTCA
GTGACTCATCAGTCATCCTGGTCATTAGGGCAGGAGGTGAGTGTGGCAGT
GAATACACAAGTCTTAGAATTCAGGCCTGTTCTTGTCATCTTGACTACTG
GAGAACCAATGAGATGTTATTGATTATAGAACTCTGCATGGAACAACAAT
GACTTTGAAACCCTTCTTATGGGGGCAAAAATCTTCAATTCTTGGCTTCT
AAATGGGTAAGTTGAAATATGAGGCAAGAGCCTCTAGTTTACAATCTTTT
ACATAAAATAGATAATTTCCTATAAAAATTACAAAACAATCATATTTTGG
GTACTTAATGAAAAAACATAGATTATGGAGTCACACTCAGAATAACAGGG
ATTTACCAAAGTAGACTTGCCGAGAATTACACAAGGGTTGAACCCATGGC
AGCTTCTTTGAGGAAGTAGCATCACTGTCTCTGTGAACCACTTATCAGTG
CAGGAGCATCTTTCTTTGGGGGAATTTTCTGACACCATGTTCCCTGCTAA
TGACTTTTTTGAATCACCTTCCTTGTGTCAATAGGCCCTCCTGTCCCTTA
AACCAACTACAGACTGTGTTGCCTCTATATCCTTTGTCTTTCAAAATTTC
AAACTTCCACTGGCCTCTACCGACTGTTTTTGTCTTTTCAAAAAACTAAA
ATGTCCTTTAAGGAAAAGGAAGTTCCTTCCCCTCCAAACCATTTTGGCCC
AAAATCTACCTCCAAAAATTCTTTCCAAAAAATACCCCCCTCTTGGTTTG
AAGTCTTAAATTTTTTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_d17.b1 MSMg01no062_d17.b1 CHROMAT_FILE:
MSMg01no062_d17.b1 PHD_FILE: MSMg01no062_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:36 2005
         (309 letters)



>mm_chr3_134033348_134034056
          Length = 709

 Score =  520 bits (269), Expect = e-152
 Identities = 290/297 (97%)
 Strand = Plus / Minus

                                                                       
Query: 13  atttattgacagcaggtattatagtattgatgtataagcccaaccagcttggttctgaca 72
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 509 atttattgacagcaggtattatagtattgatgtataagcccaaccagcttggttatgaca 450

                                                                       
Query: 73  tcagctgtttcagtgactgggtcagtaggtcttcatcattctaatctttgtctcatacta 132
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 449 tcagctgtttcagtgactgggtcagtaggtcttcatcattctaacctttgtctcatacta 390

                                                                       
Query: 133 acaacactccatttcatttcatccaatagagggttttcatattaaaacttttggaaatca 192
           |||||||||||||||||| || |||||||||||||||| |||||||||||| ||||||||
Sbjct: 389 acaacactccatttcattccagccaatagagggttttcctattaaaactttgggaaatca 330

                                                                       
Query: 193 agatgcagcaaacagggatgatgctgaatcttgacaccaacctgccagtggtgtcaacat 252
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agatgcagcaaacagtgatgatgctgaatcttgacaccaacctgccagtggtgtcaacat 270

                                                                    
Query: 253 tctaatgtatcttatatagctcagacatgtgaaaacaaacatacacagactgaacca 309
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tctaatgtatcttatatagctcagacatgtgaaaacaaacatacacagactgaacca 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no062_d17.g1 MSMg01no062_d17.g1 CHROMAT_FILE:
MSMg01no062_d17.g1 PHD_FILE: MSMg01no062_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:36 2005
         (720 letters)



>mm_chr3_133884820_133885939
          Length = 1120

 Score = 1377 bits (712), Expect = 0.0
 Identities = 718/720 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagagagcaactgggcatgtaatgtccaagaatgaagagcatctcagccagtgtaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagagagcaactgggcatgtaatgtccaagaatgaagagcatctcagccagtgtaagaa 260

                                                                       
Query: 61  gatgaaggggacctccatagaccctgaggaggaaagagttgattttgataataatggcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgaaggggacctccatagaccctgaggaggaaagagttgattttgataataatggcta 320

                                                                       
Query: 121 tctactctcaggaactagaggcacatgggagatggccattaggtggcatggatatagagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctactctcaggaactagaggcacatgggagatggccattaggtggcatggatatagagc 380

                                                                       
Query: 181 cacatgaaagctagaatgtggaaataaacgaggtcctgagagtccagagtttctggttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacatgaaagctagaatgtggaaataaacgaggtcctgagagtccagagtttctggttgt 440

                                                                       
Query: 241 cacttacaagaatggtgaaacagtgcagtcagtgactcatcagtcatcctggtcattagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacttacaagaatggtgaaacagtgcagtcagtgactcatcagtcatcctggtcattagg 500

                                                                       
Query: 301 gcaggaggtgagtgtggcagtgaatacacaagtcttagaattcaggcctgttcttgtcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaggaggtgagtgtggcagtgaatacacaagtcttagaattcaggcctgttcttgtcat 560

                                                                       
Query: 361 cttgactactggagaaccaatgagatgttattgattatagaactctgcatggaacaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgactactggagaaccaatgagatgttattgattatagaactctgcatggaacaacaa 620

                                                                       
Query: 421 tgactttgaaacccttcttatgggggcaaaaatcttcaattcttggcttctaaatgggta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgactttgaaacccttcttatgggggcaaaaatcttcaattcttggcttctaaatgggta 680

                                                                       
Query: 481 agttgaaatatgaggcaagagcctctagtttacaatcttttacataaaatagataatttc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agttgaaatatgaggcaagagcctctagtttacaatcttttacataaaatagataatttc 740

                                                                       
Query: 541 ctataaaaattacaaaacaatcatattttgggtacttaatgaaaaaacatagattatgga 600
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 741 ctataaaaattacaaaacaatcatattttgggtacttaatgaaaagacatagattatgga 800

                                                                       
Query: 601 gtcacactcagaataacagggatttaccaaagtagacttgccgagaattacacaagggtt 660
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 801 gtcacactcagaataacagggatttaccaaagtagacttgctgagaattacacaagggtt 860

                                                                       
Query: 661 gaacccatggcagcttctttgaggaagtagcatcactgtctctgtgaaccacttatcagt 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gaacccatggcagcttctttgaggaagtagcatcactgtctctgtgaaccacttatcagt 920


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1120
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1110
Effective search space:   788100
Effective search space used:   788100
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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