Query= MSMg01no062_e14.b1 MSMg01no062_e14.b1 CHROMAT_FILE:
MSMg01no062_e14.b1 PHD_FILE: MSMg01no062_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:43 2005
(687 letters)
>mm_chr3_82553266_82554354
Length = 1089
Score = 1133 bits (586), Expect = 0.0
Identities = 661/690 (95%), Gaps = 12/690 (1%)
Strand = Plus / Minus
Query: 2 tccctgttggcctttgttctctcctgagtatgtgtaccctgtaaa-c--ctgccaccatt 58
||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct: 796 tccctgttggcctttgttctctcctgagtatgtgtaccctgtaaatcttctg-gaccatt 738
Query: 59 tccagtctgtaaaccattacacattaggatttttttt---ataaatgtatcttttaagtc 115
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 737 tccagtctgtaaaccattacacattaggattttttttttcagaaatgtatcttttaagtc 678
Query: 116 aggtctagtagaataaatttggattataactttcacataagactcaaataattcacttat 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aggtctagtagaataaatttggattataactttcacataagactcaaataattcacttat 618
Query: 176 ttataggaagagaaggaaaatttagcaggcagaaaacgttaatgaaaatttcaggtgatt 235
||||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||
Sbjct: 617 ttataggaacagaaggaaaatttagcaggcagaaaactttgatgtaaatttcaggtgatt 558
Query: 236 ctggtgaaaggacttgatatctcaaaaatcatcccctaaaaatttaccagttgtgtcctt 295
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 557 ctggtgaaaggacttgatatctcaaaaatcatcccctaaaaatttaccagttatgtcctt 498
Query: 296 tgatggtgagttgtaaccacccacgagtaagccagagtaggtaggagcctcatcagttat 355
|||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||
Sbjct: 497 tgatggtgagttataaccacccatgagtaagccagaataggtcggagcctcatcagttat 438
Query: 356 cattgctgggcttgctgggatttgtgatcattctggccacacacatagcaccgaatcaag 415
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 437 cattgctgggcttgctgggatttgtgatcattctggccacacacatagcatcgaatcaag 378
Query: 416 ctctttggagaagctatgagtctgaaaatgttcccaagtctctgggtgagaaatctcaac 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctctttggagaagctatgagtctgaaaatgttcccaagtctctgggtgagaaatctcaac 318
Query: 476 gccatgcctt-ttattctgctacaaataatgtaaagttttttgtttgtttgtttgtttta 534
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 317 gccatgccttgttattctgctacaaataatgtaaagttt----tttgtttgtttgtttta 262
Query: 535 aatctggaattttgaaaacaggtgctgacaatgactccctcagcttttgaaaagctcatt 594
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 261 aatctggaattttgaaaacaggggctgacaatgactccttcagcttttgaaaagctcatt 202
Query: 595 tgtagggacaatctcttgtgtactatgtggaagcatcacctgccaataaaaatttgatgg 654
||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtagggacaatcccttatgtaatatgtggaagcatcacctgccaataaaaatttgatgg 142
Query: 655 acaataagctgaggctagattagaaggtgg 684
||||||||||||||||||||||||||||||
Sbjct: 141 acaataagctgaggctagattagaaggtgg 112
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1089
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1079
Effective search space: 730483
Effective search space used: 730483
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_e14.g1 MSMg01no062_e14.g1 CHROMAT_FILE:
MSMg01no062_e14.g1 PHD_FILE: MSMg01no062_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:43 2005
(798 letters)
>mm_chr3_82455409_82456606
Length = 1198
Score = 1444 bits (747), Expect = 0.0
Identities = 786/800 (98%), Gaps = 4/800 (0%)
Strand = Plus / Plus
Query: 1 aactattggattcatggacactgcatggagtgacggcattgtcagaagtgccccccatgt 60
||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct: 201 aactattggattcatggacactgcatggagtgaaggcattgtcagaagtgtcgtccatgt 260
Query: 61 actttaatacatcaatgaacatctagaatgcattcaca-agcaagtaatatacttgactg 119
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 actttaatacatcaatgaacatctagaatgcattcacacagcaagtaatatacttgactg 320
Query: 120 ctagagtttcatgtgggatacccccagagactctcagtagtggcttcatgagatgtgaaa 179
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagagttacatgtgggataccc--agagactctcagtagtggcttcatgagatgtgaaa 378
Query: 180 tgatgcaaaggacactgtgtgaggaagtggattctagagcaggagacagatatgatgaat 239
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 379 tgatgcaaaggacactgtgtgaggaagtggattctagagctggagacagatatgatgaat 438
Query: 240 cctgagcacatctccttgtgattcaacataggcaagaattatacatgggatcactgtcta 299
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 439 cctgagcacatctccttgtgattcaacataggcaagaattatacataggatcactgtcta 498
Query: 300 tatgtgcatttttcctcttttcatttccaagactcaaaaatagtggttgatgtaccaaat 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 499 tatgtgcatttttcctcttttcatttccaagactcaaaaatggtggttgatgtaccaaat 558
Query: 360 gtttactgatgttttcaaaattagcatttccacaatttcagcaaatttgcattcaataat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gtttactgatgttttcaaaattagcatttccacaatttcagcaaatttgcattcaataat 618
Query: 420 tacagtactgcactctttctaattgataactagtaagatttcattttactgggaaacaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tacagtactgcactctttctaattgataactagtaagatttcattttactgggaaacaaa 678
Query: 480 gcagcaaatggaccatacccacttgaattctttttttttccctagagctggctcttttaa 539
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 679 gcagcaaatggaccatacccacttgaattctttttttttccctagatctggctcttttaa 738
Query: 540 tgaacctcaaattgttcttttt-ccgggcagcagtcatgggtttcctggcaacagccatt 598
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgaacctcaaattgttcttttttccgggcagcagtcatgggtttcctggcaacagccatt 798
Query: 599 tgggtttccaggtattttaaagcttagattctaaaattcctgaaggagagtcctacacag 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tgggtttccaggtattttaaagcttagattctaaaattcctgaaggagagtcctacacag 858
Query: 659 ctgcaggatgcacacagtggctggttcacaggacagccttctcccctacatcaactgttt 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ctgcaggatgcacacagtggctggttcacaggacagccttctcccctacatcaactgttt 918
Query: 719 ctacaaaagcaactgtgtcttagccttgcatttacttatctgcattgctgaanacaccca 778
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 919 ctacaaaagcaactgtgtcttagccttgcatttacttatctgcattgctgaaaacaccca 978
Query: 779 agttgtttctgttttatggt 798
||||||||||||||||||||
Sbjct: 979 agttgtttctgttttatggt 998
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 798
Length of database: 1198
Length adjustment: 10
Effective length of query: 788
Effective length of database: 1188
Effective search space: 936144
Effective search space used: 936144
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
