Query= MSMg01no062_f16.b1 MSMg01no062_f16.b1 CHROMAT_FILE:
MSMg01no062_f16.b1 PHD_FILE: MSMg01no062_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:51 2005
(704 letters)
>mm_chr3_148987946_148989050
Length = 1105
Score = 1317 bits (681), Expect = 0.0
Identities = 699/705 (99%), Gaps = 1/705 (0%)
Strand = Plus / Plus
Query: 1 ctggaattttccgtctctgaagaagtgcgtttactgagcagccgaggctctggtctattg 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ctggaattttccgtctctgaagaagtgtgtttactgagcagccgaggctctggtctattg 260
Query: 61 atgttcttcatatatgcatcatgatgaaatactctgggagtctagagatgccaatggaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 atgttcttcatatatgcatcatgatgaaatactctgggagtctagagatgccaatagaat 320
Query: 121 tttataatcattttatctgggtctctgcttttcactctacaaagaagcccaacatgtatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttataatcattttatctgggtctctgcttttcactctacaaagaagcccaacatgtatt 380
Query: 181 agtgcacactgcttgggtagataggacttgtttagttgagggtaaaggaccataggtgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgcacactgcttgggtagataggacttgtttagttgagggtaaaggaccataggtgat 440
Query: 241 gtcagcacgtgtggttatactgtggtaccgaactggacatcatggtaatggaccaaaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcagcacgtgtggttatactgtggtaccgaactggacatcatggtaatggaccaaaagt 500
Query: 301 gagaccaattgttctaaaggaaaaaggaaagaactctcaattgcccgtttttggatggtt 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagaccaattgttcaaaaggaaaaaggaaagaactctcaattgcccgtttttggatggtt 560
Query: 361 acatgaaatatctgtgatttcggtctttctgtcatctcatgtcaaattgcctctgtaatt 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 acatgaaatatctgtgatttcggtctttctgtcatctcatgtcaaattgcctctgtaact 620
Query: 421 caccccc-gaaacagatcaatacaattttactatgctctgtgtgactcctggagctaccc 479
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caccccccgaaacagatcaatacaattttactatgctctgtgtgactcctggagctaccc 680
Query: 480 ttgccttgagctcgggagcctgagctgtgcctgctggcttgcttattggggtattgaatg 539
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcgccttgagctcgggagcctgagctgtgcctgctggcttgcttattggggtattgaatg 740
Query: 540 catgttgtactgtctgctggcctgggatatgtgacatccatgctggatagtcttcctctg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catgttgtactgtctgctggcctgggatatgtgacatccatgctggatagtcttcctctg 800
Query: 600 aggagaattttccagtggagcgtctgtttcttcccaacatttattctccccagaatctgt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aggagaattttccagtggagcgtctgtttcttcccaacatttattctccccagaatctgt 860
Query: 660 agctatatacgaagtacttcattttcatattttggtgtttctgag 704
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 agctatatacgaagtacttcattttcatattttggtgtttctgag 905
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1105
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1095
Effective search space: 759930
Effective search space used: 759930
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_f16.g1 MSMg01no062_f16.g1 CHROMAT_FILE:
MSMg01no062_f16.g1 PHD_FILE: MSMg01no062_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:51 2005
(663 letters)
>mm_chr3_149068389_149069450
Length = 1062
Score = 977 bits (505), Expect = 0.0
Identities = 547/567 (96%), Gaps = 13/567 (2%)
Strand = Plus / Minus
Query: 1 cttccatcaaataacaatcagggacaaaatcaatgggatggagccacaagattgaaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 cttccatcaaataacaatcagggacaaaatcaatgggatggagccacaagattgaaatga 857
Query: 61 tttgagaggggagactg---gaagaaatgtctctcataaccaggggacagttcagtccct 117
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 856 tttgagaggggagactggaagaagaaatgtctctcataaccaggggacagttcagtcccc 797
Query: 118 actagaagaatctgggactcgggttccctaga-agtatgaagtatgaagtacagtgtgcc 176
||||| ||||||||||||||||||| |||||| | ||||||||||| ||||||
Sbjct: 796 actagcagaatctgggactcgggtttcctagaca--------tatgaagtacaatgtgcc 745
Query: 177 atccccctaacagcagacgtagtgagatttcagcacagcgagcgagcagttctctgcttc 236
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atccccctaacagcagacatagtgagatttcagcacagcgagcgagcagttctctgcttc 685
Query: 237 ctaatacaggctgtgctttcttgtgagaggggtggggtggggtgctttcattagacagtt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctaatacaggctgtgctttcttgtgagaggggtggggtggggtgctttcattagacagtt 625
Query: 297 tgtcatgtgattgtgatgcaaaatagaaccatttatttgctaattacatagcaatggcat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtcatgtgattgtgatgcaaaatagaaccatttatttgctaattacatagcaatggcat 565
Query: 357 ggattttttttttaatcacatgtccttcatcctggaggaaaaaaatatatccccattttt 416
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gga-tttttttttaatcacatgtccttcatcctggaggaaaaaaatatatccccattttt 506
Query: 417 gttacaactcaaagaattggttctgaataagcaatacctattatgtttatgcatatattt 476
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 gttacaactcaaagacttggttctgaataagcaatacatattatgtttatgcatatattt 446
Query: 477 tcataaccaactaaaactttaggaagtaaaacaagagataaaatctggaagatatttatt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcataaccaactaaaactttaggaagtaaaacaagagataaaatctggaagatatttatt 386
Query: 537 accagattatgacaatttaaaatttag 563
|||||||||||||||||||||||||||
Sbjct: 385 accagattatgacaatttaaaatttag 359
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space: 686956
Effective search space used: 686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
